miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29313 5' -54.9 NC_006150.1 + 158238 0.66 0.972716
Target:  5'- -gCUCUAUCUgAGUCucaCUCUCUGCcuuaGGCu -3'
miRNA:   3'- ugGAGGUAGGgUCAG---GAGAGAUG----UCG- -5'
29313 5' -54.9 NC_006150.1 + 95546 0.66 0.966928
Target:  5'- cGCCUCCAaCCUAGUuuacuUCUgUUUACAGa -3'
miRNA:   3'- -UGGAGGUaGGGUCA-----GGAgAGAUGUCg -5'
29313 5' -54.9 NC_006150.1 + 82138 0.66 0.966928
Target:  5'- -aCUCCG-CCCGGUCCUgcCUcCUGgAGUa -3'
miRNA:   3'- ugGAGGUaGGGUCAGGA--GA-GAUgUCG- -5'
29313 5' -54.9 NC_006150.1 + 196382 0.66 0.966928
Target:  5'- gUCUCCAUCaCC-GUCCUCgUgUACGGa -3'
miRNA:   3'- uGGAGGUAG-GGuCAGGAG-AgAUGUCg -5'
29313 5' -54.9 NC_006150.1 + 10021 0.67 0.952858
Target:  5'- uACC-CCAugUCCCAGUCCUUUagugaaGGCc -3'
miRNA:   3'- -UGGaGGU--AGGGUCAGGAGAgaug--UCG- -5'
29313 5' -54.9 NC_006150.1 + 218089 0.67 0.944504
Target:  5'- aACCUCguUCCUgggucgcgcucuGGUCCUCgUCggucaACAGCu -3'
miRNA:   3'- -UGGAGguAGGG------------UCAGGAG-AGa----UGUCG- -5'
29313 5' -54.9 NC_006150.1 + 102766 0.67 0.935235
Target:  5'- cACgUCCGUCCCAGUgauUCUgUCcauaaGCGGCu -3'
miRNA:   3'- -UGgAGGUAGGGUCA---GGAgAGa----UGUCG- -5'
29313 5' -54.9 NC_006150.1 + 109794 0.67 0.935235
Target:  5'- gACCUCCGgaucuUCUCAGgCCUCUCggguucuUGGCa -3'
miRNA:   3'- -UGGAGGU-----AGGGUCaGGAGAGau-----GUCG- -5'
29313 5' -54.9 NC_006150.1 + 205532 0.68 0.930254
Target:  5'- gACCcucaUCCGUUCCGGUCCgcgCUCcAUAcGCa -3'
miRNA:   3'- -UGG----AGGUAGGGUCAGGa--GAGaUGU-CG- -5'
29313 5' -54.9 NC_006150.1 + 203065 0.68 0.925039
Target:  5'- cGCCUCCA-CCCAucCCUCgaaUGCAGg -3'
miRNA:   3'- -UGGAGGUaGGGUcaGGAGag-AUGUCg -5'
29313 5' -54.9 NC_006150.1 + 85030 0.68 0.919593
Target:  5'- cGCCUCaucaCCUGGcCCUCaUCUGCGGUa -3'
miRNA:   3'- -UGGAGgua-GGGUCaGGAG-AGAUGUCG- -5'
29313 5' -54.9 NC_006150.1 + 25920 0.68 0.906794
Target:  5'- uGCCUgCCAUacacauccaaaaCCAGUCCUC-CUcgaGCGGCu -3'
miRNA:   3'- -UGGA-GGUAg-----------GGUCAGGAGaGA---UGUCG- -5'
29313 5' -54.9 NC_006150.1 + 114338 0.7 0.859638
Target:  5'- gACCUCCAgcacccgUUCCAGaUCCUgcuuucgaCUCUGCuGCa -3'
miRNA:   3'- -UGGAGGU-------AGGGUC-AGGA--------GAGAUGuCG- -5'
29313 5' -54.9 NC_006150.1 + 170616 0.72 0.728676
Target:  5'- cACCggcCCAUCCCAcGUCCgCUCUAuCAGg -3'
miRNA:   3'- -UGGa--GGUAGGGU-CAGGaGAGAU-GUCg -5'
29313 5' -54.9 NC_006150.1 + 201969 0.73 0.679273
Target:  5'- cACCcCCAauauUCCCAGUgcuuccaauuUCUCUUUGCAGCa -3'
miRNA:   3'- -UGGaGGU----AGGGUCA----------GGAGAGAUGUCG- -5'
29313 5' -54.9 NC_006150.1 + 105993 1.11 0.004086
Target:  5'- gACCUCCAUCCCAGUCCUCUCUACAGCc -3'
miRNA:   3'- -UGGAGGUAGGGUCAGGAGAGAUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.