miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29315 3' -56.9 NC_006150.1 + 124119 0.66 0.943547
Target:  5'- gACGAGAugaagaugauuuUGGUGGUgUuuuGCGCCaggaaGCCCa -3'
miRNA:   3'- gUGUUCU------------ACCGCCAgGu--UGCGG-----CGGG- -5'
29315 3' -56.9 NC_006150.1 + 88557 0.66 0.943547
Target:  5'- uGCAGGGgcgcGGUucccuGGUCgCAGCcaggcuuccguGCCGCCCa -3'
miRNA:   3'- gUGUUCUa---CCG-----CCAG-GUUG-----------CGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 133386 0.66 0.939074
Target:  5'- uGCGGGGccugUGGCGGa-CGACGCCGUg- -3'
miRNA:   3'- gUGUUCU----ACCGCCagGUUGCGGCGgg -5'
29315 3' -56.9 NC_006150.1 + 69785 0.66 0.936283
Target:  5'- uUACGAGGUGGU-GUCUGAgaccauuuagggcauCGCUGCCUg -3'
miRNA:   3'- -GUGUUCUACCGcCAGGUU---------------GCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 37855 0.66 0.934379
Target:  5'- aGCGAGA-GGCaG-CCAGCGCC-CCg -3'
miRNA:   3'- gUGUUCUaCCGcCaGGUUGCGGcGGg -5'
29315 3' -56.9 NC_006150.1 + 68764 0.66 0.934379
Target:  5'- gACGuGAUGGCaacuuugaGGcUgUAGCGCCGCCUu -3'
miRNA:   3'- gUGUuCUACCG--------CC-AgGUUGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 56785 0.66 0.926403
Target:  5'- aUACGGGGU-GCGuaacgcucaguuguuGUCCAuCGCCGCCg -3'
miRNA:   3'- -GUGUUCUAcCGC---------------CAGGUuGCGGCGGg -5'
29315 3' -56.9 NC_006150.1 + 121971 0.66 0.92432
Target:  5'- gACcuGGGUGGCGu---GAUGCCGCCCu -3'
miRNA:   3'- gUGu-UCUACCGCcaggUUGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 13164 0.66 0.918956
Target:  5'- gACcuGGUGGCGGUCgguaGAgGgCGCCUu -3'
miRNA:   3'- gUGuuCUACCGCCAGg---UUgCgGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 88616 0.67 0.913369
Target:  5'- ----cGAUuGCGGUUCGcaGCCGCCCg -3'
miRNA:   3'- guguuCUAcCGCCAGGUugCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 751 0.67 0.913369
Target:  5'- cCGCGu-GUGGCGcUCgCuGCGCCGCCUa -3'
miRNA:   3'- -GUGUucUACCGCcAG-GuUGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 113666 0.67 0.913369
Target:  5'- gGCGAGGccccGCGGUCCcgaAAUGCCuCCCu -3'
miRNA:   3'- gUGUUCUac--CGCCAGG---UUGCGGcGGG- -5'
29315 3' -56.9 NC_006150.1 + 88287 0.67 0.907561
Target:  5'- cCGgGGGGaGGgGGUagcgCCAgcggaACGCCGCCCc -3'
miRNA:   3'- -GUgUUCUaCCgCCA----GGU-----UGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 181151 0.67 0.907561
Target:  5'- cCGCAAGucgcuGUGG-CC-GCGCCGCCUg -3'
miRNA:   3'- -GUGUUCuac--CGCCaGGuUGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 94542 0.67 0.902145
Target:  5'- cCGCGAGAUGGCGGcCCAggaacaaugguuuuuGucugcauuguucuuCGCgcgCGCCCu -3'
miRNA:   3'- -GUGUUCUACCGCCaGGU---------------U--------------GCG---GCGGG- -5'
29315 3' -56.9 NC_006150.1 + 120020 0.67 0.901532
Target:  5'- gGCGAuGUGGCcuuccaugacGGUgaaagCCAGCGCgCGCCCc -3'
miRNA:   3'- gUGUUcUACCG----------CCA-----GGUUGCG-GCGGG- -5'
29315 3' -56.9 NC_006150.1 + 216571 0.67 0.901532
Target:  5'- gCugGAGAcgGGCGacUCCGaaAUGCCGCCg -3'
miRNA:   3'- -GugUUCUa-CCGCc-AGGU--UGCGGCGGg -5'
29315 3' -56.9 NC_006150.1 + 88353 0.67 0.901532
Target:  5'- gGgGAGggGGCGGcgCaugcagGACGCCGUCCc -3'
miRNA:   3'- gUgUUCuaCCGCCa-Gg-----UUGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 149502 0.67 0.895287
Target:  5'- -cCGAGGUGGaaGcCCcuCGUCGCCCg -3'
miRNA:   3'- guGUUCUACCgcCaGGuuGCGGCGGG- -5'
29315 3' -56.9 NC_006150.1 + 81611 0.67 0.895287
Target:  5'- cCGCGAGcagcgucuuuucGUGGgguCGGUCUu-UGCCGCCCc -3'
miRNA:   3'- -GUGUUC------------UACC---GCCAGGuuGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.