miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29317 5' -57.2 NC_006150.1 + 113592 0.66 0.89233
Target:  5'- gUGuACAGCUGuCCgaaagugGCGGGGcCCAUGUu -3'
miRNA:   3'- -AC-UGUCGAC-GGa------CGUCCCaGGUGUAc -5'
29317 5' -57.2 NC_006150.1 + 82047 0.66 0.885647
Target:  5'- cUGAacaAGC-GCCUGCAGGGcuugcUCUGCAa- -3'
miRNA:   3'- -ACUg--UCGaCGGACGUCCC-----AGGUGUac -5'
29317 5' -57.2 NC_006150.1 + 216630 0.66 0.878748
Target:  5'- gUGGCGGCUGCggugcucgGCAGGGaCCAgGg- -3'
miRNA:   3'- -ACUGUCGACGga------CGUCCCaGGUgUac -5'
29317 5' -57.2 NC_006150.1 + 29075 0.66 0.878748
Target:  5'- aGACAgcaaucugaaucGCUGCCUGCAGaauuGGaCC-CAUGg -3'
miRNA:   3'- aCUGU------------CGACGGACGUC----CCaGGuGUAC- -5'
29317 5' -57.2 NC_006150.1 + 210125 0.67 0.871635
Target:  5'- cUGACAGUaGCa-GCAGGGUUCugGg- -3'
miRNA:   3'- -ACUGUCGaCGgaCGUCCCAGGugUac -5'
29317 5' -57.2 NC_006150.1 + 182217 0.68 0.831425
Target:  5'- cGACagguuGGCUGCCUGCcaagucucccGGGGgaaaaaagacaaCCGCGUGa -3'
miRNA:   3'- aCUG-----UCGACGGACG----------UCCCa-----------GGUGUAC- -5'
29317 5' -57.2 NC_006150.1 + 179858 0.68 0.816351
Target:  5'- cGuACAGUUGUgCUGaCAGGGUUCGCAg- -3'
miRNA:   3'- aC-UGUCGACG-GAC-GUCCCAGGUGUac -5'
29317 5' -57.2 NC_006150.1 + 181290 0.69 0.771869
Target:  5'- aGGCGGCUGCCcugggcgGCGGcGGUa-GCAUGa -3'
miRNA:   3'- aCUGUCGACGGa------CGUC-CCAggUGUAC- -5'
29317 5' -57.2 NC_006150.1 + 171080 0.69 0.762577
Target:  5'- aUGGCAGUcaacagcugUGCCUGUAuuaucGGGUCCAUg-- -3'
miRNA:   3'- -ACUGUCG---------ACGGACGU-----CCCAGGUGuac -5'
29317 5' -57.2 NC_006150.1 + 220175 0.69 0.743663
Target:  5'- cGAUAGCUGCCgcagcugcggcUGCGuuGGG-CCACGUa -3'
miRNA:   3'- aCUGUCGACGG-----------ACGU--CCCaGGUGUAc -5'
29317 5' -57.2 NC_006150.1 + 318 0.7 0.704773
Target:  5'- gGACGGCUGCC--CGGGGUUgGCGg- -3'
miRNA:   3'- aCUGUCGACGGacGUCCCAGgUGUac -5'
29317 5' -57.2 NC_006150.1 + 113842 0.7 0.69488
Target:  5'- cGGCAGCuggUGCCU-CAGGGgCgGCAUGg -3'
miRNA:   3'- aCUGUCG---ACGGAcGUCCCaGgUGUAC- -5'
29317 5' -57.2 NC_006150.1 + 172450 0.73 0.554692
Target:  5'- aUGAUGGCUGUCUGCcaAGGuguGUUCACAUGu -3'
miRNA:   3'- -ACUGUCGACGGACG--UCC---CAGGUGUAC- -5'
29317 5' -57.2 NC_006150.1 + 69758 0.73 0.544852
Target:  5'- gGGCAucGCUGCCUGC-GGGUCgGC-UGg -3'
miRNA:   3'- aCUGU--CGACGGACGuCCCAGgUGuAC- -5'
29317 5' -57.2 NC_006150.1 + 70012 0.74 0.459451
Target:  5'- aGugGGUUGCCgcaagGCAcGGGUCCgGCGUGa -3'
miRNA:   3'- aCugUCGACGGa----CGU-CCCAGG-UGUAC- -5'
29317 5' -57.2 NC_006150.1 + 152397 0.74 0.450392
Target:  5'- aGGCGGCcacgGCCUGCGGGGUgUGCGg- -3'
miRNA:   3'- aCUGUCGa---CGGACGUCCCAgGUGUac -5'
29317 5' -57.2 NC_006150.1 + 111088 1.08 0.002944
Target:  5'- cUGACAGCUGCCUGCAGGGUCCACAUGa -3'
miRNA:   3'- -ACUGUCGACGGACGUCCCAGGUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.