Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29319 | 5' | -51.2 | NC_006150.1 | + | 124124 | 0.67 | 0.994625 |
Target: 5'- -gAUGAAGaUGAuuuuGGuGGUGUUUUGCGCc -3' miRNA: 3'- ggUGCUUC-AUU----CCuCCGCGAAACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 84782 | 0.67 | 0.992862 |
Target: 5'- aCCGCaGAugagggccaGGUGAuGAGGCGCauaGCGCu -3' miRNA: 3'- -GGUG-CU---------UCAUUcCUCCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 181274 | 0.67 | 0.992862 |
Target: 5'- aCGCGGAGggcGGGaGAGGCgGCUgcccUGgGCg -3' miRNA: 3'- gGUGCUUCa--UUC-CUCCG-CGAa---ACgCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 54463 | 0.68 | 0.991822 |
Target: 5'- -uGCucAGUGagGGGGGGCGCguguaUGUGCa -3' miRNA: 3'- ggUGcuUCAU--UCCUCCGCGaa---ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 188910 | 0.68 | 0.991822 |
Target: 5'- --uCGggGUAacacGGGAuGGCGCac-GCGCa -3' miRNA: 3'- gguGCuuCAU----UCCU-CCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 136493 | 0.68 | 0.991822 |
Target: 5'- aUACGAAGUAcuGuuucGGgGCUUUGCGg -3' miRNA: 3'- gGUGCUUCAUucCu---CCgCGAAACGCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 95438 | 0.68 | 0.990666 |
Target: 5'- uCCGUGAAGgauGGAccuGGCGCg--GCGCc -3' miRNA: 3'- -GGUGCUUCauuCCU---CCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 91007 | 0.68 | 0.990666 |
Target: 5'- -gGCGggGcGAGGAGGgGUg--GCGg -3' miRNA: 3'- ggUGCuuCaUUCCUCCgCGaaaCGCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 88251 | 0.69 | 0.982842 |
Target: 5'- gCCGCGcagcccuGgcGGGGGGCGgagcgUGCGCu -3' miRNA: 3'- -GGUGCuu-----CauUCCUCCGCgaa--ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 88141 | 0.69 | 0.982842 |
Target: 5'- -gGCGggG--GGGuGGGCGCagUGUGCa -3' miRNA: 3'- ggUGCuuCauUCC-UCCGCGaaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 57736 | 0.69 | 0.978605 |
Target: 5'- uCCGCGAA--AAGGAGGUucaucgGCccauagUGCGCa -3' miRNA: 3'- -GGUGCUUcaUUCCUCCG------CGaa----ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1432 | 0.69 | 0.976218 |
Target: 5'- -aGCGAgaaaGGcGAGGAGGUGUug-GCGCa -3' miRNA: 3'- ggUGCU----UCaUUCCUCCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 71045 | 0.69 | 0.975969 |
Target: 5'- gCCGCGuaucAGUGcggcgcaAGGGGuGCGCUcgcugGCGCa -3' miRNA: 3'- -GGUGCu---UCAU-------UCCUC-CGCGAaa---CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 88375 | 0.7 | 0.96437 |
Target: 5'- gCgGCGggGUGGGGuugucgagggggaGGGgGCg--GCGCa -3' miRNA: 3'- -GgUGCuuCAUUCC-------------UCCgCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 70757 | 0.71 | 0.957675 |
Target: 5'- aCACGAAacGAGGAGGCccaccGCaugUGCGCc -3' miRNA: 3'- gGUGCUUcaUUCCUCCG-----CGaa-ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 51735 | 0.71 | 0.949748 |
Target: 5'- aCCAgGGAGgcaAAGGAGGacccugguuuCGCU-UGCGCu -3' miRNA: 3'- -GGUgCUUCa--UUCCUCC----------GCGAaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 88019 | 0.71 | 0.940889 |
Target: 5'- gCCugGggGaUGGGGcGGCGUUccgcugGCGCu -3' miRNA: 3'- -GGugCuuC-AUUCCuCCGCGAaa----CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1865 | 0.73 | 0.8959 |
Target: 5'- gUCugGggGUGGGGGGuuGCGUggaggUGUGCg -3' miRNA: 3'- -GGugCuuCAUUCCUC--CGCGaa---ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 86427 | 0.73 | 0.8959 |
Target: 5'- aCCGuCGAAG-GGGGcGGCGCgccagGCGCa -3' miRNA: 3'- -GGU-GCUUCaUUCCuCCGCGaaa--CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 70909 | 0.73 | 0.889212 |
Target: 5'- -gGCGGAGgcgGAGGAGGUGUgg-GCGg -3' miRNA: 3'- ggUGCUUCa--UUCCUCCGCGaaaCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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