miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 117172 0.67 0.931947
Target:  5'- gAGGCAGGUGAcacACGaAUGGCGGCc- -3'
miRNA:   3'- gUCUGUUCGCUa--UGCgUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 136764 0.67 0.926906
Target:  5'- aGGAUGAGUGGcGCGUguuCGGCGGagaGGa -3'
miRNA:   3'- gUCUGUUCGCUaUGCGu--GCCGCCg--CC- -5'
29320 3' -55.9 NC_006150.1 + 147868 0.67 0.926906
Target:  5'- -cGGCAAGCaguuAUACGCGCGuaGGCa- -3'
miRNA:   3'- guCUGUUCGc---UAUGCGUGCcgCCGcc -5'
29320 3' -55.9 NC_006150.1 + 206550 0.67 0.926906
Target:  5'- aCAGACAguaguAGCGAggagggaggggACGaagAUGGCGGCGa -3'
miRNA:   3'- -GUCUGU-----UCGCUa----------UGCg--UGCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 71032 0.67 0.926906
Target:  5'- gCGGcGCAAGgGGUGCGCuCGcuggcgcacauGCGGUGGg -3'
miRNA:   3'- -GUC-UGUUCgCUAUGCGuGC-----------CGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 88428 0.67 0.921642
Target:  5'- cCAGAaGGGCGGggGCGCGCGGCccaGGa -3'
miRNA:   3'- -GUCUgUUCGCUa-UGCGUGCCGccgCC- -5'
29320 3' -55.9 NC_006150.1 + 51636 0.68 0.916154
Target:  5'- cCAGACcGGCGAUAC-CGuCuGCGGgGGa -3'
miRNA:   3'- -GUCUGuUCGCUAUGcGU-GcCGCCgCC- -5'
29320 3' -55.9 NC_006150.1 + 152491 0.68 0.910442
Target:  5'- -uGAUuaaugcGGCGAcGCucuGCGCGGCGGUGGc -3'
miRNA:   3'- guCUGu-----UCGCUaUG---CGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 92283 0.68 0.904509
Target:  5'- uGGA--GGCGggAUGCugGCGGUGGUGGg -3'
miRNA:   3'- gUCUguUCGCuaUGCG--UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 90994 0.69 0.884733
Target:  5'- gAGACAcacccgaGGCGggGCGaggaGgGGUGGCGGu -3'
miRNA:   3'- gUCUGU-------UCGCuaUGCg---UgCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 135061 0.69 0.878609
Target:  5'- gUAGACAGGCcAUaaacgcaaugACGCugGGaaGGCGGa -3'
miRNA:   3'- -GUCUGUUCGcUA----------UGCGugCCg-CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 219729 0.69 0.871609
Target:  5'- gGGGCuguGAGUGAcaguUGCaGCagcaGCGGCGGCGGc -3'
miRNA:   3'- gUCUG---UUCGCU----AUG-CG----UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 214828 0.69 0.864408
Target:  5'- aUAGGCAAGCGuagcgacgACGaugAUGGUGGUGGu -3'
miRNA:   3'- -GUCUGUUCGCua------UGCg--UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 181153 0.69 0.864408
Target:  5'- gAGGCGAGCGG---GCAgGGCGG-GGa -3'
miRNA:   3'- gUCUGUUCGCUaugCGUgCCGCCgCC- -5'
29320 3' -55.9 NC_006150.1 + 170812 0.69 0.857011
Target:  5'- -uGGCGAGUaAUACuGCACGGggucaGGCGGg -3'
miRNA:   3'- guCUGUUCGcUAUG-CGUGCCg----CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 120749 0.69 0.857011
Target:  5'- -uGACAGGuCGGgcagACG-ACGGUGGUGGg -3'
miRNA:   3'- guCUGUUC-GCUa---UGCgUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 102305 0.7 0.825574
Target:  5'- -cGGCGguugccgcGGCGGcgACGUccugacACGGCGGCGGa -3'
miRNA:   3'- guCUGU--------UCGCUa-UGCG------UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 29053 0.7 0.817285
Target:  5'- gAGACugGAGCGAUGCagGCuuUGGUGGUGGu -3'
miRNA:   3'- gUCUG--UUCGCUAUG--CGu-GCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 193875 0.71 0.791503
Target:  5'- cUAGACGAGCGAUcauCGCuuagcUGGCuGCGGc -3'
miRNA:   3'- -GUCUGUUCGCUAu--GCGu----GCCGcCGCC- -5'
29320 3' -55.9 NC_006150.1 + 221137 0.71 0.773627
Target:  5'- gGGGCGuGCGGgagACGUACGGCaGGCa- -3'
miRNA:   3'- gUCUGUuCGCUa--UGCGUGCCG-CCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.