miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 5' -54.9 NC_006150.1 + 170843 0.66 0.962973
Target:  5'- ---gGCCGgUGUGaCGCAGCUUG-UGAa -3'
miRNA:   3'- aaggUGGCgAUAC-GCGUCGAGCaACU- -5'
29320 5' -54.9 NC_006150.1 + 2794 0.66 0.962973
Target:  5'- cUCCuGCUGCUGaGCGCuccacuGCUgCGUUGGu -3'
miRNA:   3'- aAGG-UGGCGAUaCGCGu-----CGA-GCAACU- -5'
29320 5' -54.9 NC_006150.1 + 113830 0.67 0.94317
Target:  5'- uUUCCGCCGCa--GCGgCAGCUgGUg-- -3'
miRNA:   3'- -AAGGUGGCGauaCGC-GUCGAgCAacu -5'
29320 5' -54.9 NC_006150.1 + 68690 0.67 0.94317
Target:  5'- --aCGCCGCUA-GCGguGCUgCGgUGAc -3'
miRNA:   3'- aagGUGGCGAUaCGCguCGA-GCaACU- -5'
29320 5' -54.9 NC_006150.1 + 70773 0.67 0.928486
Target:  5'- -cCCACCGCaUGUGCGcCAGCgagCGc--- -3'
miRNA:   3'- aaGGUGGCG-AUACGC-GUCGa--GCaacu -5'
29320 5' -54.9 NC_006150.1 + 109377 0.68 0.890672
Target:  5'- -cCCACUGCUuaccuaagaaauaaGUGUGCGGuCUCGggGGa -3'
miRNA:   3'- aaGGUGGCGA--------------UACGCGUC-GAGCaaCU- -5'
29320 5' -54.9 NC_006150.1 + 216480 0.69 0.878891
Target:  5'- -aCCgagACCGCUGUGCGUuuuuGCU-GUUGAu -3'
miRNA:   3'- aaGG---UGGCGAUACGCGu---CGAgCAACU- -5'
29320 5' -54.9 NC_006150.1 + 123735 0.71 0.779397
Target:  5'- -gCCGCCGCcGUGCGUAucGCUUGUcUGAu -3'
miRNA:   3'- aaGGUGGCGaUACGCGU--CGAGCA-ACU- -5'
29320 5' -54.9 NC_006150.1 + 619 0.71 0.770048
Target:  5'- gUUUCACCGU---GCGCGGCUCGcgUGGa -3'
miRNA:   3'- -AAGGUGGCGauaCGCGUCGAGCa-ACU- -5'
29320 5' -54.9 NC_006150.1 + 172864 0.72 0.701671
Target:  5'- aUCgaaACCGCUGUGCGCAGCacucugcagaUGUUGAu -3'
miRNA:   3'- aAGg--UGGCGAUACGCGUCGa---------GCAACU- -5'
29320 5' -54.9 NC_006150.1 + 123530 1.06 0.006602
Target:  5'- cUUCCACCGCUAUGCGCAGCUCGUUGAu -3'
miRNA:   3'- -AAGGUGGCGAUACGCGUCGAGCAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.