miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29321 3' -51.2 NC_006150.1 + 102283 0.66 0.998303
Target:  5'- gUCCUgacaCGgcGGCGGAucgACUUCGCa -3'
miRNA:   3'- -AGGAa---GCuuCCGCUUuugUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 137716 0.66 0.998303
Target:  5'- ----aCGAA-GCGAAacAACACUUCGCGg -3'
miRNA:   3'- aggaaGCUUcCGCUU--UUGUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 1931 0.66 0.997978
Target:  5'- gUCC--CGAAGGCGAAucuCGCCcCGUc -3'
miRNA:   3'- -AGGaaGCUUCCGCUUuu-GUGGaGCGc -5'
29321 3' -51.2 NC_006150.1 + 93080 0.66 0.997978
Target:  5'- aUCggagUCG-GGGCGuccAGAUACCUCGCc -3'
miRNA:   3'- aGGa---AGCuUCCGCu--UUUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 141493 0.66 0.997978
Target:  5'- gUUCUgaaUGAGGGcCGAGAGCAcgucaaugcCCUUGCGa -3'
miRNA:   3'- -AGGAa--GCUUCC-GCUUUUGU---------GGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 108041 0.66 0.997978
Target:  5'- gCCga-GGAGGCGGugaaAAAUACUUCGUa -3'
miRNA:   3'- aGGaagCUUCCGCU----UUUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 83604 0.66 0.996673
Target:  5'- uUCCUuauUUGcuGGgGGAGACACCcaauuUCGCGu -3'
miRNA:   3'- -AGGA---AGCuuCCgCUUUUGUGG-----AGCGC- -5'
29321 3' -51.2 NC_006150.1 + 129894 0.67 0.996048
Target:  5'- gUCCg-CGAcgAGGCGGgccacguAGGgACCUCGCGc -3'
miRNA:   3'- -AGGaaGCU--UCCGCU-------UUUgUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 83316 0.67 0.994741
Target:  5'- aUCCUUCaGGcgcaGGGCGAAAucaGCCggugaCGCGa -3'
miRNA:   3'- -AGGAAG-CU----UCCGCUUUug-UGGa----GCGC- -5'
29321 3' -51.2 NC_006150.1 + 109002 0.67 0.993925
Target:  5'- aCCaguacgUUGAAGGCGGuuACACgUUUGCGa -3'
miRNA:   3'- aGGa-----AGCUUCCGCUuuUGUG-GAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 141902 0.67 0.993925
Target:  5'- aCCUuuaUCGA--GCGA--ACGCCUUGCGa -3'
miRNA:   3'- aGGA---AGCUucCGCUuuUGUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 102357 0.68 0.991987
Target:  5'- aCCUUCuGAGGCG---GCGCUUCGgGc -3'
miRNA:   3'- aGGAAGcUUCCGCuuuUGUGGAGCgC- -5'
29321 3' -51.2 NC_006150.1 + 36787 0.68 0.991987
Target:  5'- -----aGccGGCGAGAGCgGCCUCGCGc -3'
miRNA:   3'- aggaagCuuCCGCUUUUG-UGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 127349 0.68 0.989589
Target:  5'- cUUCUUCuGGAGGCaccaGAGuacACACCUCGUa -3'
miRNA:   3'- -AGGAAG-CUUCCG----CUUu--UGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 10035 0.68 0.989589
Target:  5'- gUCCUUuagUGAAGGCc---GgGCCUCGCGc -3'
miRNA:   3'- -AGGAA---GCUUCCGcuuuUgUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 105066 0.68 0.988196
Target:  5'- cUCCUUUGAAuuuCGA--ACGCCUCGCu -3'
miRNA:   3'- -AGGAAGCUUcc-GCUuuUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 125900 0.68 0.986663
Target:  5'- gCCUUCGAaaauccgaGGGCauGAAAuuguGCaACCUCGCa -3'
miRNA:   3'- aGGAAGCU--------UCCG--CUUU----UG-UGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 215130 0.69 0.983144
Target:  5'- cUCCgugCGcGAGGCGgcAGCACC-CGCc -3'
miRNA:   3'- -AGGaa-GC-UUCCGCuuUUGUGGaGCGc -5'
29321 3' -51.2 NC_006150.1 + 149511 0.69 0.98114
Target:  5'- gCCUaCGAcccgAGGUGGAAGCcCCUCGUc -3'
miRNA:   3'- aGGAaGCU----UCCGCUUUUGuGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 215764 0.69 0.978964
Target:  5'- gCCUgucauaUCGAGguuGGCGAGGACGCCacCGUGg -3'
miRNA:   3'- aGGA------AGCUU---CCGCUUUUGUGGa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.