miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29321 3' -51.2 NC_006150.1 + 1931 0.66 0.997978
Target:  5'- gUCC--CGAAGGCGAAucuCGCCcCGUc -3'
miRNA:   3'- -AGGaaGCUUCCGCUUuu-GUGGaGCGc -5'
29321 3' -51.2 NC_006150.1 + 10035 0.68 0.989589
Target:  5'- gUCCUUuagUGAAGGCc---GgGCCUCGCGc -3'
miRNA:   3'- -AGGAA---GCUUCCGcuuuUgUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 36787 0.68 0.991987
Target:  5'- -----aGccGGCGAGAGCgGCCUCGCGc -3'
miRNA:   3'- aggaagCuuCCGCUUUUG-UGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 47705 0.72 0.926713
Target:  5'- gUCCUccUCGAGGacCGGcucACACCUCGCGg -3'
miRNA:   3'- -AGGA--AGCUUCc-GCUuu-UGUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 83316 0.67 0.994741
Target:  5'- aUCCUUCaGGcgcaGGGCGAAAucaGCCggugaCGCGa -3'
miRNA:   3'- -AGGAAG-CU----UCCGCUUUug-UGGa----GCGC- -5'
29321 3' -51.2 NC_006150.1 + 83604 0.66 0.996673
Target:  5'- uUCCUuauUUGcuGGgGGAGACACCcaauuUCGCGu -3'
miRNA:   3'- -AGGA---AGCuuCCgCUUUUGUGG-----AGCGC- -5'
29321 3' -51.2 NC_006150.1 + 93080 0.66 0.997978
Target:  5'- aUCggagUCG-GGGCGuccAGAUACCUCGCc -3'
miRNA:   3'- aGGa---AGCuUCCGCu--UUUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 102283 0.66 0.998303
Target:  5'- gUCCUgacaCGgcGGCGGAucgACUUCGCa -3'
miRNA:   3'- -AGGAa---GCuuCCGCUUuugUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 102357 0.68 0.991987
Target:  5'- aCCUUCuGAGGCG---GCGCUUCGgGc -3'
miRNA:   3'- aGGAAGcUUCCGCuuuUGUGGAGCgC- -5'
29321 3' -51.2 NC_006150.1 + 105066 0.68 0.988196
Target:  5'- cUCCUUUGAAuuuCGA--ACGCCUCGCu -3'
miRNA:   3'- -AGGAAGCUUcc-GCUuuUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 108041 0.66 0.997978
Target:  5'- gCCga-GGAGGCGGugaaAAAUACUUCGUa -3'
miRNA:   3'- aGGaagCUUCCGCU----UUUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 109002 0.67 0.993925
Target:  5'- aCCaguacgUUGAAGGCGGuuACACgUUUGCGa -3'
miRNA:   3'- aGGa-----AGCUUCCGCUuuUGUG-GAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 109813 0.74 0.869096
Target:  5'- cUCCUggGAAGGCGAcGACgACCUC-CGg -3'
miRNA:   3'- -AGGAagCUUCCGCUuUUG-UGGAGcGC- -5'
29321 3' -51.2 NC_006150.1 + 114719 0.7 0.971322
Target:  5'- cUCCUcCGAGGGCGGccGAGCcaugUCUCGCc -3'
miRNA:   3'- -AGGAaGCUUCCGCU--UUUGu---GGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 120023 0.7 0.968379
Target:  5'- aCCUgggCG-AGGCcguAACACCUCGCc -3'
miRNA:   3'- aGGAa--GCuUCCGcuuUUGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 125900 0.68 0.986663
Target:  5'- gCCUUCGAaaauccgaGGGCauGAAAuuguGCaACCUCGCa -3'
miRNA:   3'- aGGAAGCU--------UCCG--CUUU----UG-UGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 126447 0.7 0.968379
Target:  5'- -gCUUUGAuuucGCGAu-ACACCUCGCGa -3'
miRNA:   3'- agGAAGCUuc--CGCUuuUGUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 127349 0.68 0.989589
Target:  5'- cUUCUUCuGGAGGCaccaGAGuacACACCUCGUa -3'
miRNA:   3'- -AGGAAG-CUUCCG----CUUu--UGUGGAGCGc -5'
29321 3' -51.2 NC_006150.1 + 129894 0.67 0.996048
Target:  5'- gUCCg-CGAcgAGGCGGgccacguAGGgACCUCGCGc -3'
miRNA:   3'- -AGGaaGCU--UCCGCU-------UUUgUGGAGCGC- -5'
29321 3' -51.2 NC_006150.1 + 134193 1.09 0.012978
Target:  5'- cUCCUUCGAAGGCGAAAACACCUCGCGc -3'
miRNA:   3'- -AGGAAGCUUCCGCUUUUGUGGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.