Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29321 | 5' | -60.6 | NC_006150.1 | + | 170000 | 0.66 | 0.765712 |
Target: 5'- gAUCGCCAccauagcGCGUCUCaCCCacauagcggcucgcgGCGCCGAu -3' miRNA: 3'- -UAGCGGUa------CGCAGGG-GGG---------------UGCGGUUu -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 36048 | 0.66 | 0.762049 |
Target: 5'- --aGCUcgGCGUCCUCCa--GCCGAGg -3' miRNA: 3'- uagCGGuaCGCAGGGGGgugCGGUUU- -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 180718 | 0.66 | 0.752817 |
Target: 5'- -cCGCCAccGCGccgcaUUCCCCCGCGUCGc- -3' miRNA: 3'- uaGCGGUa-CGC-----AGGGGGGUGCGGUuu -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 162409 | 0.66 | 0.743486 |
Target: 5'- uGUCGCgcaAUGUGUUCCCCgaGCGUCGGGg -3' miRNA: 3'- -UAGCGg--UACGCAGGGGGg-UGCGGUUU- -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 215142 | 0.68 | 0.63666 |
Target: 5'- -aCGCCG-GUGUCCCUCCGuacuCGCCGu- -3' miRNA: 3'- uaGCGGUaCGCAGGGGGGU----GCGGUuu -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 221382 | 0.68 | 0.626775 |
Target: 5'- -cUGCCGUaCGUCUCCCgCACGCCc-- -3' miRNA: 3'- uaGCGGUAcGCAGGGGG-GUGCGGuuu -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 92065 | 0.69 | 0.577545 |
Target: 5'- gGUUGCCc-GCGUCCCUgCUACGCCGu- -3' miRNA: 3'- -UAGCGGuaCGCAGGGG-GGUGCGGUuu -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 210416 | 0.7 | 0.510285 |
Target: 5'- -gUGCCG-GUGUCCgaCCCCGCGCCGc- -3' miRNA: 3'- uaGCGGUaCGCAGG--GGGGUGCGGUuu -5' |
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29321 | 5' | -60.6 | NC_006150.1 | + | 134227 | 1.04 | 0.002889 |
Target: 5'- gAUCGCCAUGCGUCCCCCCACGCCAAAa -3' miRNA: 3'- -UAGCGGUACGCAGGGGGGUGCGGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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