miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29321 5' -60.6 NC_006150.1 + 170000 0.66 0.765712
Target:  5'- gAUCGCCAccauagcGCGUCUCaCCCacauagcggcucgcgGCGCCGAu -3'
miRNA:   3'- -UAGCGGUa------CGCAGGG-GGG---------------UGCGGUUu -5'
29321 5' -60.6 NC_006150.1 + 36048 0.66 0.762049
Target:  5'- --aGCUcgGCGUCCUCCa--GCCGAGg -3'
miRNA:   3'- uagCGGuaCGCAGGGGGgugCGGUUU- -5'
29321 5' -60.6 NC_006150.1 + 180718 0.66 0.752817
Target:  5'- -cCGCCAccGCGccgcaUUCCCCCGCGUCGc- -3'
miRNA:   3'- uaGCGGUa-CGC-----AGGGGGGUGCGGUuu -5'
29321 5' -60.6 NC_006150.1 + 162409 0.66 0.743486
Target:  5'- uGUCGCgcaAUGUGUUCCCCgaGCGUCGGGg -3'
miRNA:   3'- -UAGCGg--UACGCAGGGGGg-UGCGGUUU- -5'
29321 5' -60.6 NC_006150.1 + 215142 0.68 0.63666
Target:  5'- -aCGCCG-GUGUCCCUCCGuacuCGCCGu- -3'
miRNA:   3'- uaGCGGUaCGCAGGGGGGU----GCGGUuu -5'
29321 5' -60.6 NC_006150.1 + 221382 0.68 0.626775
Target:  5'- -cUGCCGUaCGUCUCCCgCACGCCc-- -3'
miRNA:   3'- uaGCGGUAcGCAGGGGG-GUGCGGuuu -5'
29321 5' -60.6 NC_006150.1 + 92065 0.69 0.577545
Target:  5'- gGUUGCCc-GCGUCCCUgCUACGCCGu- -3'
miRNA:   3'- -UAGCGGuaCGCAGGGG-GGUGCGGUuu -5'
29321 5' -60.6 NC_006150.1 + 210416 0.7 0.510285
Target:  5'- -gUGCCG-GUGUCCgaCCCCGCGCCGc- -3'
miRNA:   3'- uaGCGGUaCGCAGG--GGGGUGCGGUuu -5'
29321 5' -60.6 NC_006150.1 + 134227 1.04 0.002889
Target:  5'- gAUCGCCAUGCGUCCCCCCACGCCAAAa -3'
miRNA:   3'- -UAGCGGUACGCAGGGGGGUGCGGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.