miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29322 3' -59.3 NC_006150.1 + 82587 0.66 0.850677
Target:  5'- uACUGCGaUCCGAGcGUGUUA-CUGGCGg -3'
miRNA:   3'- -UGGCGC-AGGCUC-UACAGUcGGCCGUg -5'
29322 3' -59.3 NC_006150.1 + 47970 0.66 0.850677
Target:  5'- uCCGCGUCCG-GAgcgaaacaGUCGGa-GGCGCc -3'
miRNA:   3'- uGGCGCAGGCuCUa-------CAGUCggCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 38974 0.66 0.843031
Target:  5'- cCCGUG-CaCGAGAccaUCuGCCGGCGCa -3'
miRNA:   3'- uGGCGCaG-GCUCUac-AGuCGGCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 1987 0.66 0.843031
Target:  5'- uCCGCGgucugggCUGAGGcgGUCugcgguGCCGGUGCg -3'
miRNA:   3'- uGGCGCa------GGCUCUa-CAGu-----CGGCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 170300 0.66 0.843031
Target:  5'- gGCCGC-UCCGAGucaa-AGCCuGCACg -3'
miRNA:   3'- -UGGCGcAGGCUCuacagUCGGcCGUG- -5'
29322 3' -59.3 NC_006150.1 + 184154 0.66 0.835211
Target:  5'- cCCaCGgCCgGAGA-GUUGGCCGGCGCa -3'
miRNA:   3'- uGGcGCaGG-CUCUaCAGUCGGCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 825 0.66 0.827221
Target:  5'- gGCCGCGagCGcuGA-GUCAGCCgGGCGg -3'
miRNA:   3'- -UGGCGCagGCu-CUaCAGUCGG-CCGUg -5'
29322 3' -59.3 NC_006150.1 + 173626 0.67 0.819069
Target:  5'- cCCGCGUCaaucaGcGAUGUgAGUCGGCc- -3'
miRNA:   3'- uGGCGCAGg----CuCUACAgUCGGCCGug -5'
29322 3' -59.3 NC_006150.1 + 113634 0.67 0.810762
Target:  5'- gUgGCGUCCGAcagucggacggaGAUG-CGGCUGGCGa -3'
miRNA:   3'- uGgCGCAGGCU------------CUACaGUCGGCCGUg -5'
29322 3' -59.3 NC_006150.1 + 88746 0.67 0.810762
Target:  5'- cACUGCGUCCaGGGcucgucgGggCAGCCGGCu- -3'
miRNA:   3'- -UGGCGCAGG-CUCua-----Ca-GUCGGCCGug -5'
29322 3' -59.3 NC_006150.1 + 80227 0.67 0.802307
Target:  5'- aGCuCGCGcucgCCGAGGaauaGUC-GCUGGCACg -3'
miRNA:   3'- -UG-GCGCa---GGCUCUa---CAGuCGGCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 164764 0.67 0.784101
Target:  5'- --aGCGUCCGuacUGUCAacacaacGCCGGCAUa -3'
miRNA:   3'- uggCGCAGGCucuACAGU-------CGGCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 92769 0.68 0.748885
Target:  5'- aGCUcaGCGaCCGAGAacgccgUGcUCAGCgGGCACg -3'
miRNA:   3'- -UGG--CGCaGGCUCU------AC-AGUCGgCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 76991 0.69 0.701715
Target:  5'- gGCUGUGUCCGAcGAUacGUCguGGCCGGUc- -3'
miRNA:   3'- -UGGCGCAGGCU-CUA--CAG--UCGGCCGug -5'
29322 3' -59.3 NC_006150.1 + 118070 0.69 0.682416
Target:  5'- uACCGCGUgcgCCGAGAaGU--GCCGcGCACu -3'
miRNA:   3'- -UGGCGCA---GGCUCUaCAguCGGC-CGUG- -5'
29322 3' -59.3 NC_006150.1 + 109232 0.69 0.682416
Target:  5'- --gGCGUUCGaAGGUGaCGGCCGGgGCg -3'
miRNA:   3'- uggCGCAGGC-UCUACaGUCGGCCgUG- -5'
29322 3' -59.3 NC_006150.1 + 148389 0.73 0.463126
Target:  5'- uCCGCGUCCGcGGAUGgu-GCUGGCGg -3'
miRNA:   3'- uGGCGCAGGC-UCUACaguCGGCCGUg -5'
29322 3' -59.3 NC_006150.1 + 3105 0.74 0.428329
Target:  5'- aGCCaguGCGUcgCCGAGAUGaagCAGUCGGUACa -3'
miRNA:   3'- -UGG---CGCA--GGCUCUACa--GUCGGCCGUG- -5'
29322 3' -59.3 NC_006150.1 + 117647 0.74 0.395125
Target:  5'- cGCCaaucCGUCCGGGAUGUU-GCCGGuCACg -3'
miRNA:   3'- -UGGc---GCAGGCUCUACAGuCGGCC-GUG- -5'
29322 3' -59.3 NC_006150.1 + 135714 0.97 0.014118
Target:  5'- cACCGCGUCCGAGAU-UCAGCCGGCACa -3'
miRNA:   3'- -UGGCGCAGGCUCUAcAGUCGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.