miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29323 3' -51.8 NC_006150.1 + 204918 0.66 0.996066
Target:  5'- ---cUGUUuaACGGAGCGUUuuGAcccucgccaggGGGCu -3'
miRNA:   3'- uuuuACAG--UGCCUCGCAAggCU-----------CCUG- -5'
29323 3' -51.8 NC_006150.1 + 94023 0.66 0.995412
Target:  5'- ----cGUCAUGGAGCcagaucaugUCCGucAGGGCu -3'
miRNA:   3'- uuuuaCAGUGCCUCGca-------AGGC--UCCUG- -5'
29323 3' -51.8 NC_006150.1 + 58812 0.66 0.991855
Target:  5'- gAGGcgGUCAUgcaGGAGgGaUCCGAGGGu -3'
miRNA:   3'- -UUUuaCAGUG---CCUCgCaAGGCUCCUg -5'
29323 3' -51.8 NC_006150.1 + 70599 0.66 0.991855
Target:  5'- -----uUCACG--GCGUUUCGAGGACu -3'
miRNA:   3'- uuuuacAGUGCcuCGCAAGGCUCCUG- -5'
29323 3' -51.8 NC_006150.1 + 197724 0.67 0.990691
Target:  5'- uGAAUGUgGCGGAGC---CCGAGcGAUu -3'
miRNA:   3'- uUUUACAgUGCCUCGcaaGGCUC-CUG- -5'
29323 3' -51.8 NC_006150.1 + 69120 0.67 0.989399
Target:  5'- ----cGUCACGGGGUGUUCCa----- -3'
miRNA:   3'- uuuuaCAGUGCCUCGCAAGGcuccug -5'
29323 3' -51.8 NC_006150.1 + 206962 0.68 0.978499
Target:  5'- uGAAGUGUC-CGGAGCGg-CCGAcGGuaGCu -3'
miRNA:   3'- -UUUUACAGuGCCUCGCaaGGCU-CC--UG- -5'
29323 3' -51.8 NC_006150.1 + 73510 0.68 0.978499
Target:  5'- ---cUGggcgCACGGGGUGUUCgGAGaGAUa -3'
miRNA:   3'- uuuuACa---GUGCCUCGCAAGgCUC-CUG- -5'
29323 3' -51.8 NC_006150.1 + 105849 0.69 0.967627
Target:  5'- aAAGAUGUCACGGGGCcagCCGcuGAa -3'
miRNA:   3'- -UUUUACAGUGCCUCGcaaGGCucCUg -5'
29323 3' -51.8 NC_006150.1 + 114045 0.7 0.935311
Target:  5'- ----gGUCGCGGuGCGggCUGAGcGGCu -3'
miRNA:   3'- uuuuaCAGUGCCuCGCaaGGCUC-CUG- -5'
29323 3' -51.8 NC_006150.1 + 200763 0.74 0.793257
Target:  5'- -uAAUGUCugGGGGUGguggaucauggguaUCUGAGGACa -3'
miRNA:   3'- uuUUACAGugCCUCGCa-------------AGGCUCCUG- -5'
29323 3' -51.8 NC_006150.1 + 140091 1.07 0.012521
Target:  5'- uAAAAUGUCACGGAGCGUUCCGAGGACu -3'
miRNA:   3'- -UUUUACAGUGCCUCGCAAGGCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.