Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29325 | 3' | -57.1 | NC_006150.1 | + | 147599 | 1.11 | 0.002168 |
Target: 5'- gACUCGCGGCAGCUCUCUCAAGCUGCCu -3' miRNA: 3'- -UGAGCGCCGUCGAGAGAGUUCGACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 114046 | 0.71 | 0.680077 |
Target: 5'- -gUCGCGGUgcgGGCUgagcggCUCGAGCUGCa -3' miRNA: 3'- ugAGCGCCG---UCGAga----GAGUUCGACGg -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 75521 | 0.7 | 0.699849 |
Target: 5'- -aUCGCGGUgucacggccgcAGCUCUCaUUGAGCgcgGCCc -3' miRNA: 3'- ugAGCGCCG-----------UCGAGAG-AGUUCGa--CGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 147853 | 0.7 | 0.699849 |
Target: 5'- cGCgCGUaGGCAGCUUgagaGAGCUGCCg -3' miRNA: 3'- -UGaGCG-CCGUCGAGagagUUCGACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 36737 | 0.69 | 0.802852 |
Target: 5'- gGCUCGUGGCGGCgggUC-CGuuuCUGCCa -3' miRNA: 3'- -UGAGCGCCGUCGag-AGaGUuc-GACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 95457 | 0.68 | 0.819982 |
Target: 5'- --gCGCGGCgccuuuggGGUUUUCUCA-GCUGUCa -3' miRNA: 3'- ugaGCGCCG--------UCGAGAGAGUuCGACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 178842 | 0.68 | 0.836457 |
Target: 5'- cGC-CGCuGUGGCUUgcuggCUCcGGCUGCCa -3' miRNA: 3'- -UGaGCGcCGUCGAGa----GAGuUCGACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 106039 | 0.68 | 0.836457 |
Target: 5'- uCUCaGUGGCAGUUaUUC-CGGGCUGUCa -3' miRNA: 3'- uGAG-CGCCGUCGA-GAGaGUUCGACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 147759 | 0.67 | 0.874419 |
Target: 5'- --gUGCGGCAGUcuUCUUUUGAGagUGCCa -3' miRNA: 3'- ugaGCGCCGUCG--AGAGAGUUCg-ACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 85297 | 0.66 | 0.894751 |
Target: 5'- aGCUCaucaaGGC-GCUCacggagCUCAAGCUGCa -3' miRNA: 3'- -UGAGcg---CCGuCGAGa-----GAGUUCGACGg -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 181929 | 0.66 | 0.894751 |
Target: 5'- cUUCGUGGCuuuucucuuAGCUCUCaccaaCGAGUucUGCCg -3' miRNA: 3'- uGAGCGCCG---------UCGAGAGa----GUUCG--ACGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 18382 | 0.66 | 0.894751 |
Target: 5'- -aUCGUGGUAGUugUUUUUCGAGUUGUa -3' miRNA: 3'- ugAGCGCCGUCG--AGAGAGUUCGACGg -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 89613 | 0.66 | 0.906611 |
Target: 5'- -gUCGCGGUGcGCUCUCucuugggcgugaaUCAGGC-GCUa -3' miRNA: 3'- ugAGCGCCGU-CGAGAG-------------AGUUCGaCGG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 118240 | 0.66 | 0.907213 |
Target: 5'- gGCUa-CGGCGuGCUCUC-CcAGCUGCa -3' miRNA: 3'- -UGAgcGCCGU-CGAGAGaGuUCGACGg -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 220412 | 0.66 | 0.924214 |
Target: 5'- aGCU-GCGGCAGCUaUCggUCAcacugcAGCUGgCCa -3' miRNA: 3'- -UGAgCGCCGUCGAgAG--AGU------UCGAC-GG- -5' |
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29325 | 3' | -57.1 | NC_006150.1 | + | 173517 | 0.66 | 0.924214 |
Target: 5'- gGCUC-CGuGCcaacaucGCUCUgCUCAcgAGCUGCCc -3' miRNA: 3'- -UGAGcGC-CGu------CGAGA-GAGU--UCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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