miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29326 3' -52.2 NC_006150.1 + 105458 0.66 0.996627
Target:  5'- gGUCggUGuuuuUCGGCUCAGaacggcguuaucGGACaCGCCu -3'
miRNA:   3'- gCAGa-ACuu--AGCCGGGUU------------UCUG-GCGG- -5'
29326 3' -52.2 NC_006150.1 + 108015 0.66 0.996061
Target:  5'- aGUCUucggauUGAAagGGgUCAAAGAUgGCCu -3'
miRNA:   3'- gCAGA------ACUUagCCgGGUUUCUGgCGG- -5'
29326 3' -52.2 NC_006150.1 + 82840 0.66 0.994696
Target:  5'- gGUCUacUGc--CGGCCaagAGAGGCCGUCu -3'
miRNA:   3'- gCAGA--ACuuaGCCGGg--UUUCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 201633 0.66 0.993882
Target:  5'- -----gGGAUCGGCCUcc-GAUCGCCc -3'
miRNA:   3'- gcagaaCUUAGCCGGGuuuCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 106115 0.66 0.993795
Target:  5'- -uUCUUGAGUcCGGCCaCAu-GACCcacgguaGCCg -3'
miRNA:   3'- gcAGAACUUA-GCCGG-GUuuCUGG-------CGG- -5'
29326 3' -52.2 NC_006150.1 + 38175 0.66 0.993795
Target:  5'- aCG-CUUGGAUcaacacgcgcggaCGGUCCcGAGAgCGCCc -3'
miRNA:   3'- -GCaGAACUUA-------------GCCGGGuUUCUgGCGG- -5'
29326 3' -52.2 NC_006150.1 + 216504 0.67 0.99297
Target:  5'- uCGUUgcgcaGGAUCucaGCCCGcaccGAGACCGCUg -3'
miRNA:   3'- -GCAGaa---CUUAGc--CGGGU----UUCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 63477 0.67 0.99297
Target:  5'- gGUCuUUGAAcucagCGGCCUucuuuuuGCCGCCg -3'
miRNA:   3'- gCAG-AACUUa----GCCGGGuuuc---UGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 31951 0.67 0.99297
Target:  5'- -----cGAGU-GuCCCAGAGGCCGCCa -3'
miRNA:   3'- gcagaaCUUAgCcGGGUUUCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 205206 0.67 0.99297
Target:  5'- gGUgUUGGAUUGGUUCGGAGcgguguaCGCCa -3'
miRNA:   3'- gCAgAACUUAGCCGGGUUUCug-----GCGG- -5'
29326 3' -52.2 NC_006150.1 + 71026 0.67 0.99297
Target:  5'- -----cGAAUgaCGGCuCCGuuGGCCGCCg -3'
miRNA:   3'- gcagaaCUUA--GCCG-GGUuuCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 125930 0.67 0.990823
Target:  5'- cCGUCaUGAgcaacgagggAUCGGgCCGAu--CCGCCg -3'
miRNA:   3'- -GCAGaACU----------UAGCCgGGUUucuGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 107535 0.67 0.990823
Target:  5'- cCGUCagUUGAGcaGGCCCGAGaAgCGCCg -3'
miRNA:   3'- -GCAG--AACUUagCCGGGUUUcUgGCGG- -5'
29326 3' -52.2 NC_006150.1 + 117036 0.67 0.990823
Target:  5'- uCGUCgacGAacagggguucGUCGGCguCCAu-GGCCGCCa -3'
miRNA:   3'- -GCAGaa-CU----------UAGCCG--GGUuuCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 57723 0.67 0.990823
Target:  5'- gGUUc---AUCGGCCCAuAGugCGCa -3'
miRNA:   3'- gCAGaacuUAGCCGGGUuUCugGCGg -5'
29326 3' -52.2 NC_006150.1 + 117828 0.67 0.988192
Target:  5'- -----cGAAaUGGUCCGAcucAGACCGCCu -3'
miRNA:   3'- gcagaaCUUaGCCGGGUU---UCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 106866 0.68 0.986673
Target:  5'- aCG-CUUGAGagGGCgCGacgcucGAGGCCGCUg -3'
miRNA:   3'- -GCaGAACUUagCCGgGU------UUCUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 114241 0.68 0.979063
Target:  5'- gGUCUUucGAGggCGGCCCcGAGGCCcauuCCg -3'
miRNA:   3'- gCAGAA--CUUa-GCCGGGuUUCUGGc---GG- -5'
29326 3' -52.2 NC_006150.1 + 81602 0.68 0.979063
Target:  5'- gCGUCUUuucgugGggUCGGUCUuu--GCCGCCc -3'
miRNA:   3'- -GCAGAA------CuuAGCCGGGuuucUGGCGG- -5'
29326 3' -52.2 NC_006150.1 + 23295 0.68 0.975756
Target:  5'- cCGUCUccaccccGUCCAGGGGCCGCCu -3'
miRNA:   3'- -GCAGAacuuagcCGGGUUUCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.