Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29326 | 5' | -58 | NC_006150.1 | + | 47177 | 0.66 | 0.934336 |
Target: 5'- gGGACGGaauGUCGGaugaCGUUCCuuGCGg -3' miRNA: 3'- gCCUGCCauuCAGCCcg--GCAAGG--CGC- -5' |
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29326 | 5' | -58 | NC_006150.1 | + | 120850 | 0.66 | 0.924491 |
Target: 5'- gCGGucaccgcucgaaucuCGGUGGGUCGucacgccGGCCGUUguagcugggCCGCGa -3' miRNA: 3'- -GCCu--------------GCCAUUCAGC-------CCGGCAA---------GGCGC- -5' |
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29326 | 5' | -58 | NC_006150.1 | + | 39892 | 0.68 | 0.832518 |
Target: 5'- uGGACGGUA--UCGaGGCC-UUuuGCGa -3' miRNA: 3'- gCCUGCCAUucAGC-CCGGcAAggCGC- -5' |
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29326 | 5' | -58 | NC_006150.1 | + | 109365 | 0.7 | 0.77374 |
Target: 5'- uGGA-GGUGGccaaUCGGGCCGUcaUCUGCGc -3' miRNA: 3'- gCCUgCCAUUc---AGCCCGGCA--AGGCGC- -5' |
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29326 | 5' | -58 | NC_006150.1 | + | 92372 | 0.71 | 0.718853 |
Target: 5'- cCGGGCGGUGGGgauUCGGGCgagUCgCGCa -3' miRNA: 3'- -GCCUGCCAUUC---AGCCCGgcaAG-GCGc -5' |
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29326 | 5' | -58 | NC_006150.1 | + | 148368 | 1.09 | 0.003759 |
Target: 5'- aCGGACGGUAAGUCGGGCCGUUCCGCGu -3' miRNA: 3'- -GCCUGCCAUUCAGCCCGGCAAGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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