miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29327 3' -56.6 NC_006150.1 + 187687 0.66 0.953108
Target:  5'- cGACGCAUUAUGaAGCCucu--CUGCGGc -3'
miRNA:   3'- -CUGCGUGGUGC-UCGGcuucuGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 92397 0.66 0.949148
Target:  5'- cGCGCACCggcgGCGAGUUcu--GCUGCGGu -3'
miRNA:   3'- cUGCGUGG----UGCUCGGcuucUGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 120790 0.66 0.949148
Target:  5'- cGACGCcgaugACCAgCGAGCaggaGgcGGCUGUGa -3'
miRNA:   3'- -CUGCG-----UGGU-GCUCGg---CuuCUGACGCc -5'
29327 3' -56.6 NC_006150.1 + 984 0.66 0.949148
Target:  5'- aGCGcCACaCGCGGGCCGggGGaagucccuuuCUGCc- -3'
miRNA:   3'- cUGC-GUG-GUGCUCGGCuuCU----------GACGcc -5'
29327 3' -56.6 NC_006150.1 + 88589 0.66 0.940578
Target:  5'- gGAUGCcggcuCCAgCGAucGCCGAAgcGAUUGCGGu -3'
miRNA:   3'- -CUGCGu----GGU-GCU--CGGCUU--CUGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 112319 0.66 0.935963
Target:  5'- -uUGUACCACGGcGUCGgcGACcguggUGCGGc -3'
miRNA:   3'- cuGCGUGGUGCU-CGGCuuCUG-----ACGCC- -5'
29327 3' -56.6 NC_006150.1 + 198246 0.66 0.931126
Target:  5'- -uCGCACCAUGAGCCuccaGGAGcCUuuGGa -3'
miRNA:   3'- cuGCGUGGUGCUCGG----CUUCuGAcgCC- -5'
29327 3' -56.6 NC_006150.1 + 73168 0.66 0.931126
Target:  5'- aGCGCuggcagaCAUGAuGCgGGAGugUGCGGu -3'
miRNA:   3'- cUGCGug-----GUGCU-CGgCUUCugACGCC- -5'
29327 3' -56.6 NC_006150.1 + 148581 0.66 0.931126
Target:  5'- cGGCGguCUuuGGGCCGAuucaAGACgcGCGGa -3'
miRNA:   3'- -CUGCguGGugCUCGGCU----UCUGa-CGCC- -5'
29327 3' -56.6 NC_006150.1 + 75984 0.67 0.926067
Target:  5'- uGugGCGCCugGGGgCGAgucuccgccGGAgaGCGa -3'
miRNA:   3'- -CugCGUGGugCUCgGCU---------UCUgaCGCc -5'
29327 3' -56.6 NC_006150.1 + 82263 0.67 0.926067
Target:  5'- uGGCGCACCAgcucCGGGuaGAuc-CUGCGGu -3'
miRNA:   3'- -CUGCGUGGU----GCUCggCUucuGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 12774 0.67 0.926067
Target:  5'- --aGuCACCugAgGGGCCGgcGGCUGUGGa -3'
miRNA:   3'- cugC-GUGG--UgCUCGGCuuCUGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 129604 0.67 0.920786
Target:  5'- cACGUgucCCGCGAGCaaAAG-CUGCGGg -3'
miRNA:   3'- cUGCGu--GGUGCUCGgcUUCuGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 112570 0.67 0.920786
Target:  5'- -cCGCACCACG-GUCGccGACgccGUGGu -3'
miRNA:   3'- cuGCGUGGUGCuCGGCuuCUGa--CGCC- -5'
29327 3' -56.6 NC_006150.1 + 201200 0.67 0.920786
Target:  5'- uACGCACCACaGAGCUGcu--CgGCGGu -3'
miRNA:   3'- cUGCGUGGUG-CUCGGCuucuGaCGCC- -5'
29327 3' -56.6 NC_006150.1 + 114900 0.67 0.909556
Target:  5'- cGCGCACgaGCGGGCCcGAAaAgaGCGGg -3'
miRNA:   3'- cUGCGUGg-UGCUCGG-CUUcUgaCGCC- -5'
29327 3' -56.6 NC_006150.1 + 135856 0.67 0.909556
Target:  5'- aGACGUuuauuCUACGAGCUGAucccuugcuGGCaGCGGa -3'
miRNA:   3'- -CUGCGu----GGUGCUCGGCUu--------CUGaCGCC- -5'
29327 3' -56.6 NC_006150.1 + 220431 0.67 0.90361
Target:  5'- cGugGC-CCaACGcAGCCGcAG-CUGCGGc -3'
miRNA:   3'- -CugCGuGG-UGC-UCGGCuUCuGACGCC- -5'
29327 3' -56.6 NC_006150.1 + 167934 0.68 0.897447
Target:  5'- uGACGCACCAUGccuccugcGCCGAcGACcaUGgGGc -3'
miRNA:   3'- -CUGCGUGGUGCu-------CGGCUuCUG--ACgCC- -5'
29327 3' -56.6 NC_006150.1 + 69537 0.68 0.891069
Target:  5'- aGACaGCuGCCugGAGCuCGAGaACUGCGc -3'
miRNA:   3'- -CUG-CG-UGGugCUCG-GCUUcUGACGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.