Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29327 | 3' | -56.6 | NC_006150.1 | + | 984 | 0.66 | 0.949148 |
Target: 5'- aGCGcCACaCGCGGGCCGggGGaagucccuuuCUGCc- -3' miRNA: 3'- cUGC-GUG-GUGCUCGGCuuCU----------GACGcc -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 12774 | 0.67 | 0.926067 |
Target: 5'- --aGuCACCugAgGGGCCGgcGGCUGUGGa -3' miRNA: 3'- cugC-GUGG--UgCUCGGCuuCUGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 45594 | 0.73 | 0.638558 |
Target: 5'- uACGCACgagACGAGCUGAcccGGcGCUGCGGa -3' miRNA: 3'- cUGCGUGg--UGCUCGGCU---UC-UGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 56132 | 0.72 | 0.701343 |
Target: 5'- gGACGCAUCugGgAGCUagcagugaguaucuuGcAAGGCUGCGGg -3' miRNA: 3'- -CUGCGUGGugC-UCGG---------------C-UUCUGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 57480 | 0.71 | 0.743341 |
Target: 5'- uGCGCACUAUGGGCCGAuGAaccuccuuuucGCGGa -3' miRNA: 3'- cUGCGUGGUGCUCGGCUuCUga---------CGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 69537 | 0.68 | 0.891069 |
Target: 5'- aGACaGCuGCCugGAGCuCGAGaACUGCGc -3' miRNA: 3'- -CUG-CG-UGGugCUCG-GCUUcUGACGCc -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 73168 | 0.66 | 0.931126 |
Target: 5'- aGCGCuggcagaCAUGAuGCgGGAGugUGCGGu -3' miRNA: 3'- cUGCGug-----GUGCU-CGgCUUCugACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 75984 | 0.67 | 0.926067 |
Target: 5'- uGugGCGCCugGGGgCGAgucuccgccGGAgaGCGa -3' miRNA: 3'- -CugCGUGGugCUCgGCU---------UCUgaCGCc -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 82263 | 0.67 | 0.926067 |
Target: 5'- uGGCGCACCAgcucCGGGuaGAuc-CUGCGGu -3' miRNA: 3'- -CUGCGUGGU----GCUCggCUucuGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 88148 | 0.71 | 0.75452 |
Target: 5'- ---cCGCCGCGGGCUGGAucCUGCGGu -3' miRNA: 3'- cugcGUGGUGCUCGGCUUcuGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 88589 | 0.66 | 0.940578 |
Target: 5'- gGAUGCcggcuCCAgCGAucGCCGAAgcGAUUGCGGu -3' miRNA: 3'- -CUGCGu----GGU-GCU--CGGCUU--CUGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 89845 | 0.77 | 0.39728 |
Target: 5'- aGCGCACCGCGAccgaucGUCGAcGGCUGUGGc -3' miRNA: 3'- cUGCGUGGUGCU------CGGCUuCUGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 92397 | 0.66 | 0.949148 |
Target: 5'- cGCGCACCggcgGCGAGUUcu--GCUGCGGu -3' miRNA: 3'- cUGCGUGG----UGCUCGGcuucUGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 112319 | 0.66 | 0.935963 |
Target: 5'- -uUGUACCACGGcGUCGgcGACcguggUGCGGc -3' miRNA: 3'- cuGCGUGGUGCU-CGGCuuCUG-----ACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 112570 | 0.67 | 0.920786 |
Target: 5'- -cCGCACCACG-GUCGccGACgccGUGGu -3' miRNA: 3'- cuGCGUGGUGCuCGGCuuCUGa--CGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 114900 | 0.67 | 0.909556 |
Target: 5'- cGCGCACgaGCGGGCCcGAAaAgaGCGGg -3' miRNA: 3'- cUGCGUGg-UGCUCGG-CUUcUgaCGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 120790 | 0.66 | 0.949148 |
Target: 5'- cGACGCcgaugACCAgCGAGCaggaGgcGGCUGUGa -3' miRNA: 3'- -CUGCG-----UGGU-GCUCGg---CuuCUGACGCc -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 125637 | 0.69 | 0.832786 |
Target: 5'- uGGCGCGCCGCcaucucccuacgGGGuCCGGGucGCUGCGGu -3' miRNA: 3'- -CUGCGUGGUG------------CUC-GGCUUc-UGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 129604 | 0.67 | 0.920786 |
Target: 5'- cACGUgucCCGCGAGCaaAAG-CUGCGGg -3' miRNA: 3'- cUGCGu--GGUGCUCGgcUUCuGACGCC- -5' |
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29327 | 3' | -56.6 | NC_006150.1 | + | 135856 | 0.67 | 0.909556 |
Target: 5'- aGACGUuuauuCUACGAGCUGAucccuugcuGGCaGCGGa -3' miRNA: 3'- -CUGCGu----GGUGCUCGGCUu--------CUGaCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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