miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
29327	5'	-51.9	NC_006150.1	+	52781	0.66	0.995904
	Target:  5'- aCCCCGUGUacucaAUGUGCCUcUGacaGGACu- -3' miRNA:   3'- -GGGGCGCAg----UAUACGGAuAC---CUUGua -5'
29327	5'	-51.9	NC_006150.1	+	165888	0.66	0.995904
	Target:  5'- aUCCGCGUCAUcGUcGCUgGUGGAGuCAg -3' miRNA:   3'- gGGGCGCAGUA-UA-CGGaUACCUU-GUa -5'
29327	5'	-51.9	NC_006150.1	+	133382	0.66	0.992656
	Target:  5'- cCCCUGCGgg----GCCUGUGGcgGACGa -3' miRNA:   3'- -GGGGCGCaguauaCGGAUACC--UUGUa -5'
29327	5'	-51.9	NC_006150.1	+	134480	0.68	0.982353
	Target:  5'- cCUCCGCGUCGgagGUGgCC-AUGGAAg-- -3' miRNA:   3'- -GGGGCGCAGUa--UAC-GGaUACCUUgua -5'
29327	5'	-51.9	NC_006150.1	+	128811	0.68	0.980266
	Target:  5'- cUCCaCGuCGUUAUGUGCg-GUGGAGCGg -3' miRNA:   3'- -GGG-GC-GCAGUAUACGgaUACCUUGUa -5'
29327	5'	-51.9	NC_006150.1	+	106578	0.68	0.980266
	Target:  5'- aUCCGCGUCGg--GCCccUGGGACu- -3' miRNA:   3'- gGGGCGCAGUauaCGGauACCUUGua -5'
29327	5'	-51.9	NC_006150.1	+	92669	0.7	0.944011
	Target:  5'- gCCCUGUGaCGUGUGCCUucggGGuGCGUg -3' miRNA:   3'- -GGGGCGCaGUAUACGGAua--CCuUGUA- -5'
29327	5'	-51.9	NC_006150.1	+	148559	1.09	0.009613
	Target:  5'- aCCCCGCGUCAUAUGCCUAUGGAACAUa -3' miRNA:   3'- -GGGGCGCAGUAUACGGAUACCUUGUA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home