Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 22938 | 0.67 | 0.967422 |
Target: 5'- uCGG-GCGAUGCAGUcugaGCGGUAguaguCACa -3' miRNA: 3'- uGCCaCGCUGUGUCAag--CGCCAU-----GUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 71400 | 0.68 | 0.949476 |
Target: 5'- -gGGUGCu-CACcaAGUgCGUGGUGCGCa -3' miRNA: 3'- ugCCACGcuGUG--UCAaGCGCCAUGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 105416 | 0.69 | 0.909023 |
Target: 5'- gAauGUGCGuCGCAGUUCuuGGUACAa -3' miRNA: 3'- -UgcCACGCuGUGUCAAGcgCCAUGUg -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 119522 | 0.67 | 0.953501 |
Target: 5'- cCGGUG-GACGCGgagcgcGUUCGCGGcgucuuugGCGCg -3' miRNA: 3'- uGCCACgCUGUGU------CAAGCGCCa-------UGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 119806 | 0.68 | 0.925929 |
Target: 5'- -aGGUGCGGggcCGCAG--CGCGGUagaGCGCg -3' miRNA: 3'- ugCCACGCU---GUGUCaaGCGCCA---UGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 126534 | 0.69 | 0.914889 |
Target: 5'- aGCGGcuUGUGGCuc-GUUCGCGGU-CGCg -3' miRNA: 3'- -UGCC--ACGCUGuguCAAGCGCCAuGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 128475 | 0.67 | 0.960888 |
Target: 5'- aGCaGUGUGcCAguccCAGUUCGgGGUGCAUc -3' miRNA: 3'- -UGcCACGCuGU----GUCAAGCgCCAUGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 140959 | 0.67 | 0.960888 |
Target: 5'- uACGGUGgucccgguuaUGACGCaauuuaGGUUCGCGGccaGCACc -3' miRNA: 3'- -UGCCAC----------GCUGUG------UCAAGCGCCa--UGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 142962 | 0.66 | 0.978098 |
Target: 5'- uGCGGgacGUGAUGCcguAGUccacCGUGGUACACa -3' miRNA: 3'- -UGCCa--CGCUGUG---UCAa---GCGCCAUGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 146964 | 0.66 | 0.973142 |
Target: 5'- cGCGGUauaucGCGGaauauCGCAGUauaUCGCGGUuauguCGCg -3' miRNA: 3'- -UGCCA-----CGCU-----GUGUCA---AGCGCCAu----GUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 149930 | 1.1 | 0.005275 |
Target: 5'- cACGGUGCGACACAGUUCGCGGUACACa -3' miRNA: 3'- -UGCCACGCUGUGUCAAGCGCCAUGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 180392 | 0.66 | 0.972875 |
Target: 5'- gGCGGUGCGAUcgucuguuuucauGCuGUauUCGCGGUuucgaACu -3' miRNA: 3'- -UGCCACGCUG-------------UGuCA--AGCGCCAug---UG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 180463 | 0.68 | 0.93604 |
Target: 5'- aGCcGUGCGACGCGGgggaaugcggCGCGGUgGCGg -3' miRNA: 3'- -UGcCACGCUGUGUCaa--------GCGCCA-UGUg -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 181195 | 0.69 | 0.920525 |
Target: 5'- aGCGGUggcGCGAaGCgAGUUUGCGGcgUGCACc -3' miRNA: 3'- -UGCCA---CGCUgUG-UCAAGCGCC--AUGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 201784 | 0.66 | 0.971509 |
Target: 5'- uGCGGaugGCGAUAuaccgauucacauguCAGUaaacCGUGGUGCGCg -3' miRNA: 3'- -UGCCa--CGCUGU---------------GUCAa---GCGCCAUGUG- -5' |
|||||||
29328 | 3' | -54.4 | NC_006150.1 | + | 216317 | 0.66 | 0.973142 |
Target: 5'- aACGGUGaucuCACAGUggcgUGCGGggACAUg -3' miRNA: 3'- -UGCCACgcu-GUGUCAa---GCGCCa-UGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home