Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 149966 | 1.08 | 0.00061 |
Target: 5'- cGAGGGCGGCGCGACCUGCCCGGGCAGg -3' miRNA: 3'- -CUCCCGCCGCGCUGGACGGGCCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 88182 | 0.66 | 0.525559 |
Target: 5'- -uGGGCcGCGCGcCCccGCCCuucuGGGCGGc -3' miRNA: 3'- cuCCCGcCGCGCuGGa-CGGG----CCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 150088 | 0.66 | 0.516577 |
Target: 5'- ---aGCGGUGC-ACgUGCUCGGGCGGc -3' miRNA: 3'- cuccCGCCGCGcUGgACGGGCCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 171227 | 0.68 | 0.414572 |
Target: 5'- -cGGGUgucuguGGCGCGGCg-GCCUGGGUAa -3' miRNA: 3'- cuCCCG------CCGCGCUGgaCGGGCCCGUc -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 88267 | 0.7 | 0.332732 |
Target: 5'- gGGGGGCGGaGCGugCgcucGgCUGGGCGGc -3' miRNA: 3'- -CUCCCGCCgCGCugGa---CgGGCCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 122390 | 0.7 | 0.325231 |
Target: 5'- cGGGucguccaGCGGCGCGucACCgugGCUCGGGCAu -3' miRNA: 3'- cUCC-------CGCCGCGC--UGGa--CGGGCCCGUc -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 181278 | 0.74 | 0.16778 |
Target: 5'- gGAGGGCGGgagagGCGG-CUGCCCuGGGCGGc -3' miRNA: 3'- -CUCCCGCCg----CGCUgGACGGG-CCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 130061 | 0.66 | 0.552839 |
Target: 5'- aGAGGGUaacCGCGGUCUGUCCcGGCAGa -3' miRNA: 3'- -CUCCCGcc-GCGCUGGACGGGcCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 584 | 0.66 | 0.498804 |
Target: 5'- aAGGGCcGCGUguucuuggcaGACCgccaacCCCGGGCAGc -3' miRNA: 3'- cUCCCGcCGCG----------CUGGac----GGGCCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 161262 | 0.67 | 0.490019 |
Target: 5'- -uGGGCGGUa-GGCgUGCCCuauuGGGCGGu -3' miRNA: 3'- cuCCCGCCGcgCUGgACGGG----CCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 88419 | 0.67 | 0.489145 |
Target: 5'- cGGGGGC-GCGCGGCCcaggagccccaUaccgcaggauccaGCCCGcGGCGGg -3' miRNA: 3'- -CUCCCGcCGCGCUGG-----------A-------------CGGGC-CCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 122217 | 0.67 | 0.464115 |
Target: 5'- cAGGGCGGCaucacGCcACCcagGUCCGGGUAa -3' miRNA: 3'- cUCCCGCCG-----CGcUGGa--CGGGCCCGUc -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 86419 | 0.7 | 0.312571 |
Target: 5'- aGGGGGCGGCGCG-CCagGCgCaCGGuGCAc -3' miRNA: 3'- -CUCCCGCCGCGCuGGa-CG-G-GCC-CGUc -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 81411 | 0.71 | 0.281056 |
Target: 5'- aGGGGGUgGGCGCGGCCauUCaUGGGCAGg -3' miRNA: 3'- -CUCCCG-CCGCGCUGGacGG-GCCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 86471 | 0.74 | 0.16778 |
Target: 5'- gGAGGGUGGCGCGGagUCUGUuuGGGUc- -3' miRNA: 3'- -CUCCCGCCGCGCU--GGACGggCCCGuc -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 150232 | 0.83 | 0.041044 |
Target: 5'- cGGGGUGGCGUucGGcacCCUGCCCGGGCAGg -3' miRNA: 3'- cUCCCGCCGCG--CU---GGACGGGCCCGUC- -5' |
|||||||
29328 | 5' | -66.5 | NC_006150.1 | + | 125712 | 0.66 | 0.552839 |
Target: 5'- aAGGuCGGCGCGACCgucaGgCCGGcgucgcGCAGa -3' miRNA: 3'- cUCCcGCCGCGCUGGa---CgGGCC------CGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home