Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29329 | 3' | -51.1 | NC_006150.1 | + | 90939 | 0.66 | 0.998218 |
Target: 5'- aCCgGugGCGccgACAGCaUGauGUGUGCUCa -3' miRNA: 3'- -GGaCugUGCa--UGUCG-AC--CACAUGAGg -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 80320 | 0.66 | 0.99788 |
Target: 5'- aCUGGCAC-UGCAuCUGGUGccguaacaccUACUUCg -3' miRNA: 3'- gGACUGUGcAUGUcGACCAC----------AUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 85378 | 0.66 | 0.998613 |
Target: 5'- uUCUGGauucaGCcUACGGagcuucagacucuaUGGUGUACUCCg -3' miRNA: 3'- -GGACUg----UGcAUGUCg-------------ACCACAUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 166986 | 0.66 | 0.998509 |
Target: 5'- -gUGAaaaACGUAaaGGCUGGUGU-UUCCa -3' miRNA: 3'- ggACUg--UGCAUg-UCGACCACAuGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 153212 | 0.66 | 0.998759 |
Target: 5'- --aGACGCGUugGGa-GGUGUACa-- -3' miRNA: 3'- ggaCUGUGCAugUCgaCCACAUGagg -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 25375 | 0.66 | 0.998509 |
Target: 5'- aCCUGACACGUACuGCgauaucaGGUucag-CCa -3' miRNA: 3'- -GGACUGUGCAUGuCGa------CCAcaugaGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 146167 | 0.66 | 0.998482 |
Target: 5'- aCCUGugGCGUcucauucucuguuGCAGCggcGGUcgGUGCUg- -3' miRNA: 3'- -GGACugUGCA-------------UGUCGa--CCA--CAUGAgg -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 124777 | 0.66 | 0.998218 |
Target: 5'- aCCUG-UGCGaccucgGgAGCgGGUGUGCUCUc -3' miRNA: 3'- -GGACuGUGCa-----UgUCGaCCACAUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 156445 | 0.66 | 0.998218 |
Target: 5'- uUCUGcaggauACACGUuaGGCaUGGUGUGUUCCa -3' miRNA: 3'- -GGAC------UGUGCAugUCG-ACCACAUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 150327 | 0.66 | 0.998759 |
Target: 5'- cCCgaGCACGUGCAccGCUGGaguuacuugUGUGCgCCu -3' miRNA: 3'- -GGacUGUGCAUGU--CGACC---------ACAUGaGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 49923 | 0.66 | 0.99788 |
Target: 5'- uUCUGuCGCGUugGGUgcuuucauuuUGGUG-GCUCUg -3' miRNA: 3'- -GGACuGUGCAugUCG----------ACCACaUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 125354 | 0.66 | 0.998218 |
Target: 5'- --aGAC-CGUGCGGUacGUGUACUaCCg -3' miRNA: 3'- ggaCUGuGCAUGUCGacCACAUGA-GG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 147202 | 0.67 | 0.994544 |
Target: 5'- gUUGGCAUGUACuggcaaaacgccAGCuUGGaUGUACUUCu -3' miRNA: 3'- gGACUGUGCAUG------------UCG-ACC-ACAUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 145237 | 0.67 | 0.996531 |
Target: 5'- gUCUGGC-CGUGCuGCUGGgcauCUCa -3' miRNA: 3'- -GGACUGuGCAUGuCGACCacauGAGg -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 40421 | 0.67 | 0.995218 |
Target: 5'- --aGGCACGUGCGccuccauGgUGGUGUAUcCCg -3' miRNA: 3'- ggaCUGUGCAUGU-------CgACCACAUGaGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 102282 | 0.67 | 0.995289 |
Target: 5'- uCCUGACACG-GCGGC-GGaucgACUUCg -3' miRNA: 3'- -GGACUGUGCaUGUCGaCCaca-UGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 32730 | 0.68 | 0.992769 |
Target: 5'- cCCUGGC-CucGCGGCUGGUaccugGUGCUgCa -3' miRNA: 3'- -GGACUGuGcaUGUCGACCA-----CAUGAgG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 184661 | 0.68 | 0.992769 |
Target: 5'- -gUGGCAUGUAU-GUUGGUGUACg-- -3' miRNA: 3'- ggACUGUGCAUGuCGACCACAUGagg -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 97190 | 0.68 | 0.993617 |
Target: 5'- gCCUGuccgagaGCACGUugAGCau-UGUGCUCUg -3' miRNA: 3'- -GGAC-------UGUGCAugUCGaccACAUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 216591 | 0.68 | 0.993706 |
Target: 5'- aCCUGGCGgGgucucaUGGUGUACUCg -3' miRNA: 3'- -GGACUGUgCaugucgACCACAUGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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