Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29329 | 3' | -51.1 | NC_006150.1 | + | 114161 | 0.69 | 0.986294 |
Target: 5'- cCCUGGCGCG-GCAGC-GGUc-GCUUCa -3' miRNA: 3'- -GGACUGUGCaUGUCGaCCAcaUGAGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 131828 | 0.69 | 0.982717 |
Target: 5'- aCC-GAUGCGUACAGUUGGggaUGCgCCg -3' miRNA: 3'- -GGaCUGUGCAUGUCGACCac-AUGaGG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 216648 | 0.71 | 0.961195 |
Target: 5'- gCUGACugGUugcucgccgugGCGGCUGcG-GUGCUCg -3' miRNA: 3'- gGACUGugCA-----------UGUCGAC-CaCAUGAGg -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 36215 | 0.72 | 0.925844 |
Target: 5'- aCCUGACAgcugcUGaGCAGCUGcGUGUGCagCa -3' miRNA: 3'- -GGACUGU-----GCaUGUCGAC-CACAUGagG- -5' |
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29329 | 3' | -51.1 | NC_006150.1 | + | 152287 | 1.16 | 0.005586 |
Target: 5'- gCCUGACACGUACAGCUGGUGUACUCCg -3' miRNA: 3'- -GGACUGUGCAUGUCGACCACAUGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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