Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 159809 | 0.66 | 0.99447 |
|
Target: 5'- ---aACCugGGGGACccucuGUUUGAAUCa -3' miRNA: 3'- gucaUGGugUCCCUGuc---CAGACUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 136841 | 0.67 | 0.989078 |
|
Target: 5'- gGGUA-CACGGGGACGGG-CgGAAa- -3' miRNA: 3'- gUCAUgGUGUCCCUGUCCaGaCUUag -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 117565 | 0.67 | 0.987623 |
|
Target: 5'- aGGUgGCCucguaguCGGGaGGC-GGUCUGAGUCg -3' miRNA: 3'- gUCA-UGGu------GUCC-CUGuCCAGACUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 130014 | 0.67 | 0.987623 |
|
Target: 5'- uCGGUcacgGCCGC-GGGACA-GUCUuGGAUCa -3' miRNA: 3'- -GUCA----UGGUGuCCCUGUcCAGA-CUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 59546 | 0.67 | 0.986023 |
|
Target: 5'- -uGUuUCGCAuGGaGACGGGUgCUGAAUCg -3' miRNA: 3'- guCAuGGUGU-CC-CUGUCCA-GACUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 61559 | 0.67 | 0.984269 |
|
Target: 5'- uGGUACCAaaAGGcGGCAGGcUUGAGUUa -3' miRNA: 3'- gUCAUGGUg-UCC-CUGUCCaGACUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 124981 | 0.68 | 0.97555 |
|
Target: 5'- -uGUACacacgUACAGGGAguGGagCUGAAUCu -3' miRNA: 3'- guCAUG-----GUGUCCCUguCCa-GACUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 31903 | 0.7 | 0.93936 |
|
Target: 5'- uGGUugCACAauGGGACAcGUCUGAcgUg -3' miRNA: 3'- gUCAugGUGU--CCCUGUcCAGACUuaG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 174715 | 0.73 | 0.83282 |
|
Target: 5'- uCGGUGCaggaGC-GGGACAGGguucgggaUCUGAGUCg -3' miRNA: 3'- -GUCAUGg---UGuCCCUGUCC--------AGACUUAG- -5' |
|||||||
| 29330 | 3' | -52.2 | NC_006150.1 | + | 155415 | 1.09 | 0.008597 |
|
Target: 5'- aCAGUACCACAGGGACAGGUCUGAAUCc -3' miRNA: 3'- -GUCAUGGUGUCCCUGUCCAGACUUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home