miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29331 3' -49.1 NC_006150.1 + 205217 0.66 0.999147
Target:  5'- gAGGUCAUG-GUGGUGUUGGaUUGg- -3'
miRNA:   3'- aUCCGGUAUaUACCGCAACCgAAUaa -5'
29331 3' -49.1 NC_006150.1 + 161551 0.66 0.998723
Target:  5'- -uGGCCA---AUGGCcauaUUGGCUUAUg -3'
miRNA:   3'- auCCGGUauaUACCGc---AACCGAAUAa -5'
29331 3' -49.1 NC_006150.1 + 118818 0.67 0.99813
Target:  5'- gAGGCCAcgcuccAUGGCGUcGGCggUGUUu -3'
miRNA:   3'- aUCCGGUaua---UACCGCAaCCGa-AUAA- -5'
29331 3' -49.1 NC_006150.1 + 31502 0.67 0.998095
Target:  5'- uUAGGCCAaggcaggUGUAU-GCGUUGGCc---- -3'
miRNA:   3'- -AUCCGGU-------AUAUAcCGCAACCGaauaa -5'
29331 3' -49.1 NC_006150.1 + 161428 0.67 0.996241
Target:  5'- aAGGcCCAUAUAUGGUaUUGGUa---- -3'
miRNA:   3'- aUCC-GGUAUAUACCGcAACCGaauaa -5'
29331 3' -49.1 NC_006150.1 + 207249 0.68 0.993972
Target:  5'- cGGcGCgAUGUGUGGCGUcUGGCcgAUg -3'
miRNA:   3'- aUC-CGgUAUAUACCGCA-ACCGaaUAa -5'
29331 3' -49.1 NC_006150.1 + 161068 0.68 0.993009
Target:  5'- aUAGGCUAUAUAUGaCGUaaUGGCg---- -3'
miRNA:   3'- -AUCCGGUAUAUACcGCA--ACCGaauaa -5'
29331 3' -49.1 NC_006150.1 + 76209 0.68 0.991925
Target:  5'- -cGGCCA----UGGUGUUGaGCUUGUa -3'
miRNA:   3'- auCCGGUauauACCGCAAC-CGAAUAa -5'
29331 3' -49.1 NC_006150.1 + 14152 0.7 0.980183
Target:  5'- aAGGCCAUGgg-GGCGgugUGGUUa--- -3'
miRNA:   3'- aUCCGGUAUauaCCGCa--ACCGAauaa -5'
29331 3' -49.1 NC_006150.1 + 128902 0.72 0.941342
Target:  5'- gAGGCCGUAaaUAUGGCGcuagUGGCc---- -3'
miRNA:   3'- aUCCGGUAU--AUACCGCa---ACCGaauaa -5'
29331 3' -49.1 NC_006150.1 + 220593 0.73 0.907138
Target:  5'- -uGGCCAguu-UGGCGUUGGCa---- -3'
miRNA:   3'- auCCGGUauauACCGCAACCGaauaa -5'
29331 3' -49.1 NC_006150.1 + 160779 1.05 0.02373
Target:  5'- aUAGGCCAUAUAUGGCGUUGGCUUAUUg -3'
miRNA:   3'- -AUCCGGUAUAUACCGCAACCGAAUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.