miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29331 5' -44.2 NC_006150.1 + 13519 0.66 1
Target:  5'- -cGAUGGaCGCCGUUucgcuCGUCAUu---- -3'
miRNA:   3'- caUUACC-GCGGUAAu----GCAGUAuauau -5'
29331 5' -44.2 NC_006150.1 + 120093 0.66 1
Target:  5'- --cGUGGCGCCAUUAgcccugauuuCGaCGUGUGa- -3'
miRNA:   3'- cauUACCGCGGUAAU----------GCaGUAUAUau -5'
29331 5' -44.2 NC_006150.1 + 27752 0.66 1
Target:  5'- uGUGcUGGuUGCCAUagACGUCAUAUu-- -3'
miRNA:   3'- -CAUuACC-GCGGUAa-UGCAGUAUAuau -5'
29331 5' -44.2 NC_006150.1 + 198593 0.69 0.99999
Target:  5'- -aAGUGGCcauauaaugagaGCCGUUGCGUuuggaaaCAUGUAUAu -3'
miRNA:   3'- caUUACCG------------CGGUAAUGCA-------GUAUAUAU- -5'
29331 5' -44.2 NC_006150.1 + 15129 0.69 0.999981
Target:  5'- aUGGUGGUGCCGUUGugcCGUUucgAUGUGa -3'
miRNA:   3'- cAUUACCGCGGUAAU---GCAGua-UAUAU- -5'
29331 5' -44.2 NC_006150.1 + 2406 0.7 0.999913
Target:  5'- ---cUGGUGCCGUUGCGg-GUGUGUu -3'
miRNA:   3'- cauuACCGCGGUAAUGCagUAUAUAu -5'
29331 5' -44.2 NC_006150.1 + 72627 0.71 0.999806
Target:  5'- aUGAUGGCGCaaagGUUGCaUCGUGUGUc -3'
miRNA:   3'- cAUUACCGCGg---UAAUGcAGUAUAUAu -5'
29331 5' -44.2 NC_006150.1 + 220514 0.73 0.998527
Target:  5'- -cAGUGGCGCCA--ACGUCGcgcAUGUGa -3'
miRNA:   3'- caUUACCGCGGUaaUGCAGUa--UAUAU- -5'
29331 5' -44.2 NC_006150.1 + 91352 0.78 0.965478
Target:  5'- --uAUGGCGCCGUUGuCGUCGUAc--- -3'
miRNA:   3'- cauUACCGCGGUAAU-GCAGUAUauau -5'
29331 5' -44.2 NC_006150.1 + 161053 1.04 0.103657
Target:  5'- cGUAAUGGCGCCAUUACGUCAUAUGg- -3'
miRNA:   3'- -CAUUACCGCGGUAAUGCAGUAUAUau -5'
29331 5' -44.2 NC_006150.1 + 160815 1.09 0.051807
Target:  5'- cGUAAUGGCGCCAUUACGUCAUAUAUAg -3'
miRNA:   3'- -CAUUACCGCGGUAAUGCAGUAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.