miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29332 5' -57 NC_006150.1 + 180446 0.66 0.935186
Target:  5'- uAGACUcacaaGCCCGAUGGcuacuGCaACGCCUAUUg -3'
miRNA:   3'- -UCUGG-----CGGGUUAUCc----CG-UGCGGAUGG- -5'
29332 5' -57 NC_006150.1 + 132641 0.66 0.935186
Target:  5'- -aGCCGCCUuguaaacaagcGGUAGGcGUACGCCagGCg -3'
miRNA:   3'- ucUGGCGGG-----------UUAUCC-CGUGCGGa-UGg -5'
29332 5' -57 NC_006150.1 + 88205 0.66 0.925166
Target:  5'- uGGGCgGCCCucugGGGGCguaGCCaUGCg -3'
miRNA:   3'- -UCUGgCGGGuua-UCCCGug-CGG-AUGg -5'
29332 5' -57 NC_006150.1 + 87915 0.66 0.925166
Target:  5'- --cCCGCCCAccGGGGCcuCGCa-GCCu -3'
miRNA:   3'- ucuGGCGGGUuaUCCCGu-GCGgaUGG- -5'
29332 5' -57 NC_006150.1 + 74948 0.66 0.914248
Target:  5'- -aACgCGCCCAAaucccGGaGGCACGcCCUGCa -3'
miRNA:   3'- ucUG-GCGGGUUa----UC-CCGUGC-GGAUGg -5'
29332 5' -57 NC_006150.1 + 92460 0.66 0.914248
Target:  5'- uGGAUCGCUUGAUcGGGgGCGUgUGCUc -3'
miRNA:   3'- -UCUGGCGGGUUAuCCCgUGCGgAUGG- -5'
29332 5' -57 NC_006150.1 + 113904 0.66 0.914248
Target:  5'- gGGACCGC-----GGGGCcuCGCCaGCCg -3'
miRNA:   3'- -UCUGGCGgguuaUCCCGu-GCGGaUGG- -5'
29332 5' -57 NC_006150.1 + 30119 0.66 0.913678
Target:  5'- -uACgGUUCAGUaacucaccuggggAGGGCAUGCaCUGCCa -3'
miRNA:   3'- ucUGgCGGGUUA-------------UCCCGUGCG-GAUGG- -5'
29332 5' -57 NC_006150.1 + 73900 0.67 0.908452
Target:  5'- cGGACCGCCgCucuGUGGaucGCACGCCg--- -3'
miRNA:   3'- -UCUGGCGG-Gu--UAUCc--CGUGCGGaugg -5'
29332 5' -57 NC_006150.1 + 770 0.67 0.902436
Target:  5'- -cGCCGCCUAGcgucaGGCcacccuCGCCUGCCu -3'
miRNA:   3'- ucUGGCGGGUUauc--CCGu-----GCGGAUGG- -5'
29332 5' -57 NC_006150.1 + 191537 0.67 0.902436
Target:  5'- uGACCGCCaCGcUAuucGGGCugGCucCUGCUc -3'
miRNA:   3'- uCUGGCGG-GUuAU---CCCGugCG--GAUGG- -5'
29332 5' -57 NC_006150.1 + 565 0.67 0.8962
Target:  5'- cAGACCGCCaaccccGGGCA-GCCguccuCCg -3'
miRNA:   3'- -UCUGGCGGguuau-CCCGUgCGGau---GG- -5'
29332 5' -57 NC_006150.1 + 221418 0.67 0.889747
Target:  5'- cAGACCcgcauucagcGCCC--UGGGGaggaaaGCuGCCUGCCg -3'
miRNA:   3'- -UCUGG----------CGGGuuAUCCCg-----UG-CGGAUGG- -5'
29332 5' -57 NC_006150.1 + 203128 0.67 0.885773
Target:  5'- -aACCGCCCGAggcgcccgcguuccAGGuGCcCGCgCUGCCa -3'
miRNA:   3'- ucUGGCGGGUUa-------------UCC-CGuGCG-GAUGG- -5'
29332 5' -57 NC_006150.1 + 160687 0.67 0.883081
Target:  5'- uAGcACCGCCCcuuaugGGGGUugGgCUAUa -3'
miRNA:   3'- -UC-UGGCGGGuua---UCCCGugCgGAUGg -5'
29332 5' -57 NC_006150.1 + 75215 0.67 0.883081
Target:  5'- uAGACgaGCUCAAgaugcAGGGCGUGCCU-CCg -3'
miRNA:   3'- -UCUGg-CGGGUUa----UCCCGUGCGGAuGG- -5'
29332 5' -57 NC_006150.1 + 161052 0.68 0.869126
Target:  5'- aGGACCGCCCcauugacgucAAU-GGGCAUGUaCUuggcaGCCa -3'
miRNA:   3'- -UCUGGCGGG----------UUAuCCCGUGCG-GA-----UGG- -5'
29332 5' -57 NC_006150.1 + 133929 0.68 0.838858
Target:  5'- cGACCGCCCAgAUAGaGCggACGCC--CCa -3'
miRNA:   3'- uCUGGCGGGU-UAUCcCG--UGCGGauGG- -5'
29332 5' -57 NC_006150.1 + 88519 0.68 0.830833
Target:  5'- -uGCCGCCCAGccgAGcGCACGCUccGCCc -3'
miRNA:   3'- ucUGGCGGGUUa--UCcCGUGCGGa-UGG- -5'
29332 5' -57 NC_006150.1 + 23313 0.69 0.805767
Target:  5'- gGGGCCGCCUccaAGGGCGaugGCCaggcacagaUGCCa -3'
miRNA:   3'- -UCUGGCGGGuuaUCCCGUg--CGG---------AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.