miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29332 5' -57 NC_006150.1 + 220571 0.69 0.805767
Target:  5'- aGGGCgGCCCAgugGUAGGaGUugGCCa--- -3'
miRNA:   3'- -UCUGgCGGGU---UAUCC-CGugCGGaugg -5'
29332 5' -57 NC_006150.1 + 86264 0.69 0.797106
Target:  5'- -uAUUGCuCCcGUGGGGCcggcCGCCUACCu -3'
miRNA:   3'- ucUGGCG-GGuUAUCCCGu---GCGGAUGG- -5'
29332 5' -57 NC_006150.1 + 119800 0.69 0.788305
Target:  5'- gGGGCCGCagcgCGGUAGaGCGCGCCaaagacGCCg -3'
miRNA:   3'- -UCUGGCGg---GUUAUCcCGUGCGGa-----UGG- -5'
29332 5' -57 NC_006150.1 + 149977 0.7 0.779371
Target:  5'- cGACCuGCCCGGgcAGGGUgccgaACGCC-ACCc -3'
miRNA:   3'- uCUGG-CGGGUUa-UCCCG-----UGCGGaUGG- -5'
29332 5' -57 NC_006150.1 + 40195 0.7 0.770313
Target:  5'- uGACCGaUCAGUAcaacGGCACGCCUuCCg -3'
miRNA:   3'- uCUGGCgGGUUAUc---CCGUGCGGAuGG- -5'
29332 5' -57 NC_006150.1 + 119744 0.7 0.76114
Target:  5'- -cACUGUCCGAUuguGGGCGCGCgCUGgCu -3'
miRNA:   3'- ucUGGCGGGUUAu--CCCGUGCG-GAUgG- -5'
29332 5' -57 NC_006150.1 + 181531 0.71 0.713827
Target:  5'- -cGCCGCCC---AGGGCAgcCGCCUcucccGCCc -3'
miRNA:   3'- ucUGGCGGGuuaUCCCGU--GCGGA-----UGG- -5'
29332 5' -57 NC_006150.1 + 117067 0.71 0.704134
Target:  5'- uGGCCGCCaugcGGGGCACGuCCgaaacuCCa -3'
miRNA:   3'- uCUGGCGGguuaUCCCGUGC-GGau----GG- -5'
29332 5' -57 NC_006150.1 + 85939 0.71 0.684585
Target:  5'- gAGACCuacguGCCUGAggAGGGCcgaGCGCCcACCg -3'
miRNA:   3'- -UCUGG-----CGGGUUa-UCCCG---UGCGGaUGG- -5'
29332 5' -57 NC_006150.1 + 161632 0.72 0.645062
Target:  5'- uGGACCGCCCAuugacguaAUAuGGaUACGCCU-CCa -3'
miRNA:   3'- -UCUGGCGGGU--------UAUcCC-GUGCGGAuGG- -5'
29332 5' -57 NC_006150.1 + 88014 0.72 0.635138
Target:  5'- uGGCCGCCUggggGAUGGGGCgGCGUuccgcuggcgCUACCc -3'
miRNA:   3'- uCUGGCGGG----UUAUCCCG-UGCG----------GAUGG- -5'
29332 5' -57 NC_006150.1 + 321 0.73 0.605382
Target:  5'- cGGCUGCCC---GGGGUugGCgguCUGCCa -3'
miRNA:   3'- uCUGGCGGGuuaUCCCGugCG---GAUGG- -5'
29332 5' -57 NC_006150.1 + 33172 0.73 0.605382
Target:  5'- cGACUGCCCAuccccGCGCGCCgACCg -3'
miRNA:   3'- uCUGGCGGGUuauccCGUGCGGaUGG- -5'
29332 5' -57 NC_006150.1 + 56264 0.74 0.556244
Target:  5'- -aGCCGCCCGcUGaaagacacagcuGGGCACGUCUGCg -3'
miRNA:   3'- ucUGGCGGGUuAU------------CCCGUGCGGAUGg -5'
29332 5' -57 NC_006150.1 + 9169 0.75 0.484097
Target:  5'- uGGCCGCCCGggagacccuucugagGgcggGGGGUACGuuCCUGCCg -3'
miRNA:   3'- uCUGGCGGGU---------------Ua---UCCCGUGC--GGAUGG- -5'
29332 5' -57 NC_006150.1 + 88436 0.82 0.190067
Target:  5'- aGGGCCGCCCAGaagggcgGGGGCGCGCg-GCCc -3'
miRNA:   3'- -UCUGGCGGGUUa------UCCCGUGCGgaUGG- -5'
29332 5' -57 NC_006150.1 + 161010 1.12 0.002203
Target:  5'- uAGACCGCCCAAUAGGGCACGCCUACCg -3'
miRNA:   3'- -UCUGGCGGGUUAUCCCGUGCGGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.