Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29332 | 5' | -57 | NC_006150.1 | + | 161010 | 1.12 | 0.002203 |
Target: 5'- uAGACCGCCCAAUAGGGCACGCCUACCg -3' miRNA: 3'- -UCUGGCGGGUUAUCCCGUGCGGAUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 88205 | 0.66 | 0.925166 |
Target: 5'- uGGGCgGCCCucugGGGGCguaGCCaUGCg -3' miRNA: 3'- -UCUGgCGGGuua-UCCCGug-CGG-AUGg -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 87915 | 0.66 | 0.925166 |
Target: 5'- --cCCGCCCAccGGGGCcuCGCa-GCCu -3' miRNA: 3'- ucuGGCGGGUuaUCCCGu-GCGgaUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 92460 | 0.66 | 0.914248 |
Target: 5'- uGGAUCGCUUGAUcGGGgGCGUgUGCUc -3' miRNA: 3'- -UCUGGCGGGUUAuCCCgUGCGgAUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 74948 | 0.66 | 0.914248 |
Target: 5'- -aACgCGCCCAAaucccGGaGGCACGcCCUGCa -3' miRNA: 3'- ucUG-GCGGGUUa----UC-CCGUGC-GGAUGg -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 770 | 0.67 | 0.902436 |
Target: 5'- -cGCCGCCUAGcgucaGGCcacccuCGCCUGCCu -3' miRNA: 3'- ucUGGCGGGUUauc--CCGu-----GCGGAUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 160687 | 0.67 | 0.883081 |
Target: 5'- uAGcACCGCCCcuuaugGGGGUugGgCUAUa -3' miRNA: 3'- -UC-UGGCGGGuua---UCCCGugCgGAUGg -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 161052 | 0.68 | 0.869126 |
Target: 5'- aGGACCGCCCcauugacgucAAU-GGGCAUGUaCUuggcaGCCa -3' miRNA: 3'- -UCUGGCGGG----------UUAuCCCGUGCG-GA-----UGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 220571 | 0.69 | 0.805767 |
Target: 5'- aGGGCgGCCCAgugGUAGGaGUugGCCa--- -3' miRNA: 3'- -UCUGgCGGGU---UAUCC-CGugCGGaugg -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 23313 | 0.69 | 0.805767 |
Target: 5'- gGGGCCGCCUccaAGGGCGaugGCCaggcacagaUGCCa -3' miRNA: 3'- -UCUGGCGGGuuaUCCCGUg--CGG---------AUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 149977 | 0.7 | 0.779371 |
Target: 5'- cGACCuGCCCGGgcAGGGUgccgaACGCC-ACCc -3' miRNA: 3'- uCUGG-CGGGUUa-UCCCG-----UGCGGaUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 9169 | 0.75 | 0.484097 |
Target: 5'- uGGCCGCCCGggagacccuucugagGgcggGGGGUACGuuCCUGCCg -3' miRNA: 3'- uCUGGCGGGU---------------Ua---UCCCGUGC--GGAUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 56264 | 0.74 | 0.556244 |
Target: 5'- -aGCCGCCCGcUGaaagacacagcuGGGCACGUCUGCg -3' miRNA: 3'- ucUGGCGGGUuAU------------CCCGUGCGGAUGg -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 321 | 0.73 | 0.605382 |
Target: 5'- cGGCUGCCC---GGGGUugGCgguCUGCCa -3' miRNA: 3'- uCUGGCGGGuuaUCCCGugCG---GAUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 88014 | 0.72 | 0.635138 |
Target: 5'- uGGCCGCCUggggGAUGGGGCgGCGUuccgcuggcgCUACCc -3' miRNA: 3'- uCUGGCGGG----UUAUCCCG-UGCG----------GAUGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 117067 | 0.71 | 0.704134 |
Target: 5'- uGGCCGCCaugcGGGGCACGuCCgaaacuCCa -3' miRNA: 3'- uCUGGCGGguuaUCCCGUGC-GGau----GG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 119744 | 0.7 | 0.76114 |
Target: 5'- -cACUGUCCGAUuguGGGCGCGCgCUGgCu -3' miRNA: 3'- ucUGGCGGGUUAu--CCCGUGCG-GAUgG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 40195 | 0.7 | 0.770313 |
Target: 5'- uGACCGaUCAGUAcaacGGCACGCCUuCCg -3' miRNA: 3'- uCUGGCgGGUUAUc---CCGUGCGGAuGG- -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 132641 | 0.66 | 0.935186 |
Target: 5'- -aGCCGCCUuguaaacaagcGGUAGGcGUACGCCagGCg -3' miRNA: 3'- ucUGGCGGG-----------UUAUCC-CGUGCGGa-UGg -5' |
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29332 | 5' | -57 | NC_006150.1 | + | 33172 | 0.73 | 0.605382 |
Target: 5'- cGACUGCCCAuccccGCGCGCCgACCg -3' miRNA: 3'- uCUGGCGGGUuauccCGUGCGGaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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