miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29333 3' -49.7 NC_006150.1 + 1897 0.66 0.999212
Target:  5'- cUGuCGcCGAgGGGauCGUGUugUUGGCg -3'
miRNA:   3'- aACuGCaGUUaCCC--GUACAugAACCG- -5'
29333 3' -49.7 NC_006150.1 + 101516 0.66 0.999212
Target:  5'- -gGACGcUGAUGGGCAguccGUGC--GGCa -3'
miRNA:   3'- aaCUGCaGUUACCCGUa---CAUGaaCCG- -5'
29333 3' -49.7 NC_006150.1 + 119009 0.66 0.998825
Target:  5'- uUUGGCGUgaGGUGGGCAUuccgGCgccgcUGGCc -3'
miRNA:   3'- -AACUGCAg-UUACCCGUAca--UGa----ACCG- -5'
29333 3' -49.7 NC_006150.1 + 161505 0.66 0.998577
Target:  5'- aUUGACGUCAAUGGGg-------UGGCc -3'
miRNA:   3'- -AACUGCAGUUACCCguacaugaACCG- -5'
29333 3' -49.7 NC_006150.1 + 161298 0.67 0.998255
Target:  5'- aUUGACGUCAAUGGGgugGUccuauacACgucaaugGGCg -3'
miRNA:   3'- -AACUGCAGUUACCCguaCA-------UGaa-----CCG- -5'
29333 3' -49.7 NC_006150.1 + 32622 0.67 0.997554
Target:  5'- cUGGCGUUccugGGGCGUGUcgUUGGa -3'
miRNA:   3'- aACUGCAGuua-CCCGUACAugAACCg -5'
29333 3' -49.7 NC_006150.1 + 45644 0.68 0.995978
Target:  5'- -cGAUGUCGGagGGGUc--UACUUGGCu -3'
miRNA:   3'- aaCUGCAGUUa-CCCGuacAUGAACCG- -5'
29333 3' -49.7 NC_006150.1 + 75468 0.68 0.994525
Target:  5'- cUGGCGgCAAUGGGUAg--ACagGGCa -3'
miRNA:   3'- aACUGCaGUUACCCGUacaUGaaCCG- -5'
29333 3' -49.7 NC_006150.1 + 45141 0.68 0.994525
Target:  5'- -aGACGUagguuuuGGUGGGaCAUGgaaagccGCUUGGCu -3'
miRNA:   3'- aaCUGCAg------UUACCC-GUACa------UGAACCG- -5'
29333 3' -49.7 NC_006150.1 + 104918 0.68 0.993654
Target:  5'- --cAUGUCAccacaugccGUGGGUGUGUGCagGGCu -3'
miRNA:   3'- aacUGCAGU---------UACCCGUACAUGaaCCG- -5'
29333 3' -49.7 NC_006150.1 + 114992 0.68 0.992675
Target:  5'- -aGAUGUCcgugGGUGGGCAcuUGCaUGGCc -3'
miRNA:   3'- aaCUGCAG----UUACCCGUacAUGaACCG- -5'
29333 3' -49.7 NC_006150.1 + 46477 0.69 0.991579
Target:  5'- -gGACGUaaccAUGGGUGUGUACagacagGGCc -3'
miRNA:   3'- aaCUGCAgu--UACCCGUACAUGaa----CCG- -5'
29333 3' -49.7 NC_006150.1 + 190071 0.69 0.990357
Target:  5'- gUUGAaa-CGAUGaGGCugauUGUGCUUGGCc -3'
miRNA:   3'- -AACUgcaGUUAC-CCGu---ACAUGAACCG- -5'
29333 3' -49.7 NC_006150.1 + 124919 0.7 0.982042
Target:  5'- -cGACGUCAAugucauUGGaGC-UGUGC-UGGCu -3'
miRNA:   3'- aaCUGCAGUU------ACC-CGuACAUGaACCG- -5'
29333 3' -49.7 NC_006150.1 + 161346 0.7 0.977516
Target:  5'- aUUGACGUCAAU-GGCG-GUAaaUGGCc -3'
miRNA:   3'- -AACUGCAGUUAcCCGUaCAUgaACCG- -5'
29333 3' -49.7 NC_006150.1 + 161273 0.71 0.972201
Target:  5'- aUUGACGUCAAUGGGag-GUG---GGCc -3'
miRNA:   3'- -AACUGCAGUUACCCguaCAUgaaCCG- -5'
29333 3' -49.7 NC_006150.1 + 1652 0.72 0.950944
Target:  5'- uUUGGCGUaggauggguUggUGGGCAUGcUGCgcagGGCg -3'
miRNA:   3'- -AACUGCA---------GuuACCCGUAC-AUGaa--CCG- -5'
29333 3' -49.7 NC_006150.1 + 161461 0.76 0.816556
Target:  5'- aUUGACGUCAAUGacGGUaaAUGgcccACUUGGCa -3'
miRNA:   3'- -AACUGCAGUUAC--CCG--UACa---UGAACCG- -5'
29333 3' -49.7 NC_006150.1 + 161272 0.76 0.788944
Target:  5'- aUGACGUUAAUGGGCGguaggcGUGCccuauugGGCg -3'
miRNA:   3'- aACUGCAGUUACCCGUa-----CAUGaa-----CCG- -5'
29333 3' -49.7 NC_006150.1 + 161229 0.77 0.769765
Target:  5'- aUUGACGUCAAUaggGGGCGUGggaaugGGCa -3'
miRNA:   3'- -AACUGCAGUUA---CCCGUACaugaa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.