miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29333 5' -51 NC_006150.1 + 2218 0.66 0.997911
Target:  5'- aGGGCCGUg-GCCGCCGagGAgGa--- -3'
miRNA:   3'- -CCCGGUAaaUGGCGGUaaCUgCaguu -5'
29333 5' -51 NC_006150.1 + 88726 0.66 0.997517
Target:  5'- gGGGCagccgGCUGCCuacccGACGUCGGa -3'
miRNA:   3'- -CCCGguaaaUGGCGGuaa--CUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 130659 0.66 0.997064
Target:  5'- gGGGCgCAg--GCUGCCAcgGGCGaCAGa -3'
miRNA:   3'- -CCCG-GUaaaUGGCGGUaaCUGCaGUU- -5'
29333 5' -51 NC_006150.1 + 160781 0.66 0.997016
Target:  5'- aGGCCAUauauggcguuggcUUAUUGCCAUaUGACGUa-- -3'
miRNA:   3'- cCCGGUA-------------AAUGGCGGUA-ACUGCAguu -5'
29333 5' -51 NC_006150.1 + 63462 0.66 0.995952
Target:  5'- cGGCCuucuuUUUGCCGCCGUgggaGGCGcUgGAg -3'
miRNA:   3'- cCCGGu----AAAUGGCGGUAa---CUGC-AgUU- -5'
29333 5' -51 NC_006150.1 + 161489 0.66 0.995952
Target:  5'- uGGCCcaUUGCCcauucccacGCCcccuAUUGACGUCAAu -3'
miRNA:   3'- cCCGGuaAAUGG---------CGG----UAACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 182049 0.67 0.994435
Target:  5'- cGGGCCggUUACCcgGCCGUcucucaaUGACGg--- -3'
miRNA:   3'- -CCCGGuaAAUGG--CGGUA-------ACUGCaguu -5'
29333 5' -51 NC_006150.1 + 37550 0.67 0.991617
Target:  5'- aGGGCCAaguacGCUGUCAUUGGCuggaucgagccgGUCAAu -3'
miRNA:   3'- -CCCGGUaaa--UGGCGGUAACUG------------CAGUU- -5'
29333 5' -51 NC_006150.1 + 161570 0.68 0.986006
Target:  5'- -cGUCAUUaaUACCGcCCAUUGACGUg-- -3'
miRNA:   3'- ccCGGUAA--AUGGC-GGUAACUGCAguu -5'
29333 5' -51 NC_006150.1 + 65402 0.69 0.98309
Target:  5'- gGGGCCGUUUGCaugaauuggugaaCCAUuucggcUGACGUCAc -3'
miRNA:   3'- -CCCGGUAAAUGgc-----------GGUA------ACUGCAGUu -5'
29333 5' -51 NC_006150.1 + 161325 0.69 0.972718
Target:  5'- uGGCCcgcaaugGCUGCCAaguacaugcccaUUGACGUCAAu -3'
miRNA:   3'- cCCGGuaaa---UGGCGGU------------AACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 161359 0.69 0.972718
Target:  5'- uGGCag--UACUcCCAUUGACGUCAAu -3'
miRNA:   3'- cCCGguaaAUGGcGGUAACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 161518 0.69 0.972718
Target:  5'- aGGCCc---ACCucCCAUUGACGUCAAu -3'
miRNA:   3'- cCCGGuaaaUGGc-GGUAACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 107714 0.7 0.969829
Target:  5'- cGGGCggCGUUggACCGCCAUcuUGugGUUg- -3'
miRNA:   3'- -CCCG--GUAAa-UGGCGGUA--ACugCAGuu -5'
29333 5' -51 NC_006150.1 + 161046 0.72 0.911252
Target:  5'- -cGUCAUaggACCGCCccAUUGACGUCAAu -3'
miRNA:   3'- ccCGGUAaa-UGGCGG--UAACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 135533 0.73 0.870389
Target:  5'- -cGCCAUggUGCCGCCGcgguggugGACGUCGAg -3'
miRNA:   3'- ccCGGUAa-AUGGCGGUaa------CUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 161262 0.77 0.70676
Target:  5'- uGGGCC----ACC-CCAUUGACGUCAAu -3'
miRNA:   3'- -CCCGGuaaaUGGcGGUAACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 161213 1.03 0.026382
Target:  5'- uGGGCCAUUUACCGUCAUUGACGUCAAu -3'
miRNA:   3'- -CCCGGUAAAUGGCGGUAACUGCAGUU- -5'
29333 5' -51 NC_006150.1 + 161098 1.09 0.01136
Target:  5'- cGGGCCAUUUACCGCCAUUGACGUCAAu -3'
miRNA:   3'- -CCCGGUAAAUGGCGGUAACUGCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.