miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29335 5' -40.3 NC_006150.1 + 196960 0.68 1
Target:  5'- ------cGGCUGUG----GUGCUGGCu -3'
miRNA:   3'- uauauaaCCGAUAUuaguUAUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 195294 0.66 1
Target:  5'- -----cUGGCUGU--UCGAUACacgccguacaUGGCg -3'
miRNA:   3'- uauauaACCGAUAuuAGUUAUG----------ACCG- -5'
29335 5' -40.3 NC_006150.1 + 149301 0.67 1
Target:  5'- ------cGGCgGUAGcagCAGUACUGGUg -3'
miRNA:   3'- uauauaaCCGaUAUUa--GUUAUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 14138 0.67 1
Target:  5'- -gGUG-UGGUUAUGuUCAuuuCUGGCg -3'
miRNA:   3'- uaUAUaACCGAUAUuAGUuauGACCG- -5'
29335 5' -40.3 NC_006150.1 + 40711 0.66 1
Target:  5'- aAUGUGUUGGggAuUGGUgAAauUACUGGCc -3'
miRNA:   3'- -UAUAUAACCgaU-AUUAgUU--AUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 164595 0.71 1
Target:  5'- ---cGUUGGCUAgu-UgGAUaACUGGCg -3'
miRNA:   3'- uauaUAACCGAUauuAgUUA-UGACCG- -5'
29335 5' -40.3 NC_006150.1 + 161705 0.71 1
Target:  5'- -cAUAUUGGcCUAUAG-CcAUAUUGGCu -3'
miRNA:   3'- uaUAUAACC-GAUAUUaGuUAUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 59353 0.69 1
Target:  5'- ---cAUUGGCUGUGuaaaGUCAGUGuCauugGGCa -3'
miRNA:   3'- uauaUAACCGAUAU----UAGUUAU-Ga---CCG- -5'
29335 5' -40.3 NC_006150.1 + 88111 0.69 1
Target:  5'- ------cGGCUAUGcccagGUCGccACUGGCg -3'
miRNA:   3'- uauauaaCCGAUAU-----UAGUuaUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 204907 0.66 1
Target:  5'- -gGUGUUGGCUAcacgccgcaGAUugUGGUu -3'
miRNA:   3'- uaUAUAACCGAUauuag----UUAugACCG- -5'
29335 5' -40.3 NC_006150.1 + 90547 0.66 1
Target:  5'- -----aUGGCcguUGUcGUCGcUGCUGGCg -3'
miRNA:   3'- uauauaACCG---AUAuUAGUuAUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 122167 0.67 1
Target:  5'- cAUAUAUUGGCagaacaacagugagaUaguGUAcgCGAUgACUGGCa -3'
miRNA:   3'- -UAUAUAACCG---------------A---UAUuaGUUA-UGACCG- -5'
29335 5' -40.3 NC_006150.1 + 147676 0.66 1
Target:  5'- ----uUUGGCUGccuUGAUUGAcaGCUGGCu -3'
miRNA:   3'- uauauAACCGAU---AUUAGUUa-UGACCG- -5'
29335 5' -40.3 NC_006150.1 + 153964 0.72 1
Target:  5'- cAUGUGUugcuggUGGUUAcUGAUcCAAUGCUGGUa -3'
miRNA:   3'- -UAUAUA------ACCGAU-AUUA-GUUAUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 160100 0.7 1
Target:  5'- uUGUAUUGGCUGcc--CAAUACaaGGCu -3'
miRNA:   3'- uAUAUAACCGAUauuaGUUAUGa-CCG- -5'
29335 5' -40.3 NC_006150.1 + 17429 0.69 1
Target:  5'- aAUAUAUUGGUUAUcauacgacAUCAAUAaUGGUa -3'
miRNA:   3'- -UAUAUAACCGAUAu-------UAGUUAUgACCG- -5'
29335 5' -40.3 NC_006150.1 + 127795 0.68 1
Target:  5'- ----cUUGGCgcccuUGUGAUCGAUGCUGa- -3'
miRNA:   3'- uauauAACCG-----AUAUUAGUUAUGACcg -5'
29335 5' -40.3 NC_006150.1 + 196821 0.67 1
Target:  5'- ---cGUUGGgaAUAAgcaggcUCAggGCUGGCa -3'
miRNA:   3'- uauaUAACCgaUAUU------AGUuaUGACCG- -5'
29335 5' -40.3 NC_006150.1 + 34557 0.67 1
Target:  5'- ------cGGCUgaagagaAUAGUCAAggGCUGGUg -3'
miRNA:   3'- uauauaaCCGA-------UAUUAGUUa-UGACCG- -5'
29335 5' -40.3 NC_006150.1 + 111636 0.67 1
Target:  5'- ----uUUGGCcauUAggCGAUGCUGGUc -3'
miRNA:   3'- uauauAACCGau-AUuaGUUAUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.