miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29336 3' -49.1 NC_006150.1 + 161737 0.66 0.999626
Target:  5'- cCAAGuUUUUUUGGCuCaaUGCCAGGUc -3'
miRNA:   3'- -GUUUuAAAGAACCGuGgcACGGUCCA- -5'
29336 3' -49.1 NC_006150.1 + 175036 0.67 0.999116
Target:  5'- uGGGAUacagCUUGGCACUGaGCCAGuGa -3'
miRNA:   3'- gUUUUAaa--GAACCGUGGCaCGGUC-Ca -5'
29336 3' -49.1 NC_006150.1 + 127824 0.67 0.99892
Target:  5'- -----aUUCUUGGCACCGauaugauaGuCCAGGc -3'
miRNA:   3'- guuuuaAAGAACCGUGGCa-------C-GGUCCa -5'
29336 3' -49.1 NC_006150.1 + 161971 0.67 0.998386
Target:  5'- cCAAAAaaaCUUGGCACCaUGCCaauugagGGGUg -3'
miRNA:   3'- -GUUUUaaaGAACCGUGGcACGG-------UCCA- -5'
29336 3' -49.1 NC_006150.1 + 161693 0.68 0.996232
Target:  5'- -------aCUUGGCACgGUGCCAaGUc -3'
miRNA:   3'- guuuuaaaGAACCGUGgCACGGUcCA- -5'
29336 3' -49.1 NC_006150.1 + 161903 0.69 0.994015
Target:  5'- ------gUCUUGGCAUgGUGCCAaGUc -3'
miRNA:   3'- guuuuaaAGAACCGUGgCACGGUcCA- -5'
29336 3' -49.1 NC_006150.1 + 58146 0.69 0.992025
Target:  5'- aUAAGGUUUCUcGGCAaaucuaCG-GCCAGGa -3'
miRNA:   3'- -GUUUUAAAGAaCCGUg-----GCaCGGUCCa -5'
29336 3' -49.1 NC_006150.1 + 95688 0.69 0.990851
Target:  5'- ----------aGGCGCCGcGCCAGGUc -3'
miRNA:   3'- guuuuaaagaaCCGUGGCaCGGUCCA- -5'
29336 3' -49.1 NC_006150.1 + 137265 0.7 0.989544
Target:  5'- gAAAGUUgUUUGGagaCGUGCCAGGUc -3'
miRNA:   3'- gUUUUAAaGAACCgugGCACGGUCCA- -5'
29336 3' -49.1 NC_006150.1 + 162057 0.71 0.978411
Target:  5'- gGAcAUUUUgauUUGGCGCCGUGCCAa-- -3'
miRNA:   3'- gUUuUAAAG---AACCGUGGCACGGUcca -5'
29336 3' -49.1 NC_006150.1 + 207979 0.72 0.960278
Target:  5'- cCAGug-UUUUUGGggaagacaCGCCGUGCCAGGg -3'
miRNA:   3'- -GUUuuaAAGAACC--------GUGGCACGGUCCa -5'
29336 3' -49.1 NC_006150.1 + 147056 0.76 0.853252
Target:  5'- -------aCUUGGCACCGUGCCAa-- -3'
miRNA:   3'- guuuuaaaGAACCGUGGCACGGUcca -5'
29336 3' -49.1 NC_006150.1 + 162314 0.76 0.84502
Target:  5'- cCAAAAUUUCUUGGCACgGcGCCAa-- -3'
miRNA:   3'- -GUUUUAAAGAACCGUGgCaCGGUcca -5'
29336 3' -49.1 NC_006150.1 + 161932 0.77 0.790609
Target:  5'- -------aCUUGGCACCGUGCCaaguuugGGGUg -3'
miRNA:   3'- guuuuaaaGAACCGUGGCACGG-------UCCA- -5'
29336 3' -49.1 NC_006150.1 + 162236 0.83 0.483059
Target:  5'- gCAAAuggcggUCUUGGCugUGUGCCAGGUc -3'
miRNA:   3'- -GUUUuaa---AGAACCGugGCACGGUCCA- -5'
29336 3' -49.1 NC_006150.1 + 162029 1.07 0.021067
Target:  5'- cCAAAAUUUCUUGGCACCGUGCCAGGUc -3'
miRNA:   3'- -GUUUUAAAGAACCGUGGCACGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.