miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29336 5' -48.2 NC_006150.1 + 95688 0.66 0.999829
Target:  5'- -----aGGCGCCGcGCCAGGu----- -3'
miRNA:   3'- acuaaaCCGCGGCaCGGUUCuuuaaa -5'
29336 5' -48.2 NC_006150.1 + 207160 0.66 0.999829
Target:  5'- ---cUUGGCucucuCCGaUGCCGAGAGGUUg -3'
miRNA:   3'- acuaAACCGc----GGC-ACGGUUCUUUAAa -5'
29336 5' -48.2 NC_006150.1 + 330 0.66 0.999829
Target:  5'- gGggUUGGCGgUcUGCCAAGAAc--- -3'
miRNA:   3'- aCuaAACCGCgGcACGGUUCUUuaaa -5'
29336 5' -48.2 NC_006150.1 + 162038 0.67 0.999442
Target:  5'- ---cUUGGCaCCGUGCCAGGu----- -3'
miRNA:   3'- acuaAACCGcGGCACGGUUCuuuaaa -5'
29336 5' -48.2 NC_006150.1 + 132552 0.68 0.998134
Target:  5'- aGAgggUGGC-CCaGUGCCAAGAGc--- -3'
miRNA:   3'- aCUaa-ACCGcGG-CACGGUUCUUuaaa -5'
29336 5' -48.2 NC_006150.1 + 147054 0.68 0.997332
Target:  5'- cGAcUUGGCaCCGUGCCAAcGAu---- -3'
miRNA:   3'- aCUaAACCGcGGCACGGUU-CUuuaaa -5'
29336 5' -48.2 NC_006150.1 + 207972 0.69 0.996834
Target:  5'- --uUUUGGggaagacaCGCCGUGCCAGGGGc--- -3'
miRNA:   3'- acuAAACC--------GCGGCACGGUUCUUuaaa -5'
29336 5' -48.2 NC_006150.1 + 167615 0.7 0.993064
Target:  5'- ----aUGGCGCUGUGCCuccGAAGg-- -3'
miRNA:   3'- acuaaACCGCGGCACGGuu-CUUUaaa -5'
29336 5' -48.2 NC_006150.1 + 132429 0.71 0.986346
Target:  5'- aUGGgcUGGCGgUG-GCCGAGGAGUUUg -3'
miRNA:   3'- -ACUaaACCGCgGCaCGGUUCUUUAAA- -5'
29336 5' -48.2 NC_006150.1 + 161934 0.71 0.982567
Target:  5'- cGAcUUGGCaCCGUGCCAAGu----- -3'
miRNA:   3'- aCUaAACCGcGGCACGGUUCuuuaaa -5'
29336 5' -48.2 NC_006150.1 + 162278 0.73 0.959374
Target:  5'- cGAccUGGCaCgGUGCCAAGAAAUUUu -3'
miRNA:   3'- aCUaaACCGcGgCACGGUUCUUUAAA- -5'
29336 5' -48.2 NC_006150.1 + 7559 0.74 0.926423
Target:  5'- aGAUUgcgucaacaucUGGUGCaGUGCCAAGAAGUa- -3'
miRNA:   3'- aCUAA-----------ACCGCGgCACGGUUCUUUAaa -5'
29336 5' -48.2 NC_006150.1 + 162064 1.06 0.029928
Target:  5'- uUGAUUUGGCGCCGUGCCAAGAAAUUUu -3'
miRNA:   3'- -ACUAAACCGCGGCACGGUUCUUUAAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.