miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29337 3' -48.3 NC_006150.1 + 105807 0.66 0.999866
Target:  5'- gAUGGCUGC--GCGAgucacGCgGcCCGCUGCc -3'
miRNA:   3'- -UACUGACGauUGUUa----UGgU-GGUGACG- -5'
29337 3' -48.3 NC_006150.1 + 190766 0.66 0.999866
Target:  5'- -gGACauacuCUGGCAAUGCUACCGCUc- -3'
miRNA:   3'- uaCUGac---GAUUGUUAUGGUGGUGAcg -5'
29337 3' -48.3 NC_006150.1 + 57830 0.66 0.999866
Target:  5'- -gGGCUGCUGACuaugGCCAacgUgAUUGCc -3'
miRNA:   3'- uaCUGACGAUUGuua-UGGU---GgUGACG- -5'
29337 3' -48.3 NC_006150.1 + 101030 0.66 0.999866
Target:  5'- cGUGGCaUGCcAGCA--GCCA-CACUGCc -3'
miRNA:   3'- -UACUG-ACGaUUGUuaUGGUgGUGACG- -5'
29337 3' -48.3 NC_006150.1 + 31104 0.66 0.999859
Target:  5'- --aACUGCUAGCGugcgcauuaCGCCACUcGCa -3'
miRNA:   3'- uacUGACGAUUGUuaug-----GUGGUGA-CG- -5'
29337 3' -48.3 NC_006150.1 + 213415 0.66 0.999827
Target:  5'- -aGGCUGCUuGCGGUAgUguuuGCUGCUGUa -3'
miRNA:   3'- uaCUGACGAuUGUUAUgG----UGGUGACG- -5'
29337 3' -48.3 NC_006150.1 + 116890 0.66 0.999827
Target:  5'- -cGGCUGCU-GC---GCCAUCACaGCa -3'
miRNA:   3'- uaCUGACGAuUGuuaUGGUGGUGaCG- -5'
29337 3' -48.3 NC_006150.1 + 70822 0.66 0.999822
Target:  5'- -cGGCUccuccucuugcccGCUGcCAcgGCCGCCACUaaGCa -3'
miRNA:   3'- uaCUGA-------------CGAUuGUuaUGGUGGUGA--CG- -5'
29337 3' -48.3 NC_006150.1 + 68272 0.66 0.999778
Target:  5'- gAUGACgUGCcAACAGUaaucgguuGCCGCCuaggauguCUGCu -3'
miRNA:   3'- -UACUG-ACGaUUGUUA--------UGGUGGu-------GACG- -5'
29337 3' -48.3 NC_006150.1 + 49598 0.66 0.999778
Target:  5'- uAUGGCUGCaucGCAGUGCgCGCuCAagaucCUGCu -3'
miRNA:   3'- -UACUGACGau-UGUUAUG-GUG-GU-----GACG- -5'
29337 3' -48.3 NC_006150.1 + 116770 0.66 0.999778
Target:  5'- cGUGACUGaCUuuccGCAcUACCACCg--GCa -3'
miRNA:   3'- -UACUGAC-GAu---UGUuAUGGUGGugaCG- -5'
29337 3' -48.3 NC_006150.1 + 200506 0.66 0.999778
Target:  5'- -cGugUGuCUAAauauGUAauguguuucCCACCACUGCa -3'
miRNA:   3'- uaCugAC-GAUUgu--UAU---------GGUGGUGACG- -5'
29337 3' -48.3 NC_006150.1 + 146565 0.66 0.999778
Target:  5'- -gGGCUGaaAGCAcgACCACCGCc-- -3'
miRNA:   3'- uaCUGACgaUUGUuaUGGUGGUGacg -5'
29337 3' -48.3 NC_006150.1 + 69007 0.66 0.999778
Target:  5'- --cACgGCUAACGAcgaguucuggcUACCGCCAacaUGCg -3'
miRNA:   3'- uacUGaCGAUUGUU-----------AUGGUGGUg--ACG- -5'
29337 3' -48.3 NC_006150.1 + 3799 0.66 0.999717
Target:  5'- -aGACccGC-AACAacauGUGCCugCACUGUa -3'
miRNA:   3'- uaCUGa-CGaUUGU----UAUGGugGUGACG- -5'
29337 3' -48.3 NC_006150.1 + 73946 0.66 0.999717
Target:  5'- -aGACUuccGCgu-CGcgGCCGCCGCUuGCg -3'
miRNA:   3'- uaCUGA---CGauuGUuaUGGUGGUGA-CG- -5'
29337 3' -48.3 NC_006150.1 + 212103 0.66 0.999717
Target:  5'- cAUGACagUGCUGACGAgguCgGCCAUagagGCg -3'
miRNA:   3'- -UACUG--ACGAUUGUUau-GgUGGUGa---CG- -5'
29337 3' -48.3 NC_006150.1 + 111440 0.66 0.999651
Target:  5'- gAUGuuuGCUGCgcgucgucauggugGACGAUGCCGCCGaggacgaugguuuuCUGCu -3'
miRNA:   3'- -UAC---UGACGa-------------UUGUUAUGGUGGU--------------GACG- -5'
29337 3' -48.3 NC_006150.1 + 146441 0.66 0.999642
Target:  5'- -aGGCUaaacAACAGcaccgACCGCCGCUGCa -3'
miRNA:   3'- uaCUGAcga-UUGUUa----UGGUGGUGACG- -5'
29337 3' -48.3 NC_006150.1 + 174121 0.66 0.999642
Target:  5'- -gGGCaguUGCUGACaAGUACCuuaGCCuCUGCc -3'
miRNA:   3'- uaCUG---ACGAUUG-UUAUGG---UGGuGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.