miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29337 5' -54.1 NC_006150.1 + 88084 0.66 0.98903
Target:  5'- uUGCccgGACGGC-GCCGcggacugCGCCACCg -3'
miRNA:   3'- gAUGccaCUGCUGuUGGCa------GCGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 88020 0.66 0.98903
Target:  5'- cCUGgGGgauggGGCGGCGuuCCGcuggCGCUACCc -3'
miRNA:   3'- -GAUgCCa----CUGCUGUu-GGCa---GCGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 2424 0.66 0.98903
Target:  5'- -gACGGcGACGACAacgaaaacACCGUaC-CCAUCa -3'
miRNA:   3'- gaUGCCaCUGCUGU--------UGGCA-GcGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 42570 0.66 0.987626
Target:  5'- -gACGaUGAUGACaAACCGUCuaCAUCu -3'
miRNA:   3'- gaUGCcACUGCUG-UUGGCAGcgGUGG- -5'
29337 5' -54.1 NC_006150.1 + 67120 0.66 0.987626
Target:  5'- ---aGGUGGCaaGACAGCCGgaaUGUCAUCu -3'
miRNA:   3'- gaugCCACUG--CUGUUGGCa--GCGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 219756 0.66 0.987626
Target:  5'- -aGCGGcGGCGGCAggACCuggcGUgGCCGCg -3'
miRNA:   3'- gaUGCCaCUGCUGU--UGG----CAgCGGUGg -5'
29337 5' -54.1 NC_006150.1 + 91117 0.66 0.987626
Target:  5'- gCUGCGGUGuCGAC-ACU---GCCAUCa -3'
miRNA:   3'- -GAUGCCACuGCUGuUGGcagCGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 207816 0.66 0.98672
Target:  5'- aUACuGUGAUGACAGCUGUCuGUauguggaugaccuucUACCg -3'
miRNA:   3'- gAUGcCACUGCUGUUGGCAG-CG---------------GUGG- -5'
29337 5' -54.1 NC_006150.1 + 142721 0.66 0.986248
Target:  5'- aCUACGGcaucacgucccgcacGGCGAUGACCaUCGCCAa- -3'
miRNA:   3'- -GAUGCCa--------------CUGCUGUUGGcAGCGGUgg -5'
29337 5' -54.1 NC_006150.1 + 103272 0.66 0.986088
Target:  5'- --cCGGUGACGGCAGCgGgaccgUGCUAa- -3'
miRNA:   3'- gauGCCACUGCUGUUGgCa----GCGGUgg -5'
29337 5' -54.1 NC_006150.1 + 92964 0.66 0.986088
Target:  5'- -gGCGG-GACGA--ACUGcUCGCuCACCu -3'
miRNA:   3'- gaUGCCaCUGCUguUGGC-AGCG-GUGG- -5'
29337 5' -54.1 NC_006150.1 + 88097 0.66 0.986088
Target:  5'- -gAUGG-GACGGCGuCCugcaugCGCCGCCc -3'
miRNA:   3'- gaUGCCaCUGCUGUuGGca----GCGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 220463 0.66 0.985927
Target:  5'- ---aGGUGGCGACAAggacaauCCaGUCGUCugUg -3'
miRNA:   3'- gaugCCACUGCUGUU-------GG-CAGCGGugG- -5'
29337 5' -54.1 NC_006150.1 + 190731 0.66 0.985764
Target:  5'- -gGCGGUGGCGACacacucaaaauuaGugUGUCgauccauGCCACa -3'
miRNA:   3'- gaUGCCACUGCUG-------------UugGCAG-------CGGUGg -5'
29337 5' -54.1 NC_006150.1 + 47688 0.66 0.984407
Target:  5'- --uCGGcGACGGCGGCCG-CGuCCuCCu -3'
miRNA:   3'- gauGCCaCUGCUGUUGGCaGC-GGuGG- -5'
29337 5' -54.1 NC_006150.1 + 181195 0.66 0.983328
Target:  5'- -aGCGGUGGCGcgaaGCGAguuugcggcgugcacCCGU-GCCACUg -3'
miRNA:   3'- gaUGCCACUGC----UGUU---------------GGCAgCGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 180496 0.67 0.980589
Target:  5'- -cAUGGUGugGAUcguuacuuGGCCagcaGCCACCa -3'
miRNA:   3'- gaUGCCACugCUG--------UUGGcag-CGGUGG- -5'
29337 5' -54.1 NC_006150.1 + 140391 0.67 0.980589
Target:  5'- -gGCGGUGGgaaagauguCGAUGACCGUgucgucgucgCGCC-CCg -3'
miRNA:   3'- gaUGCCACU---------GCUGUUGGCA----------GCGGuGG- -5'
29337 5' -54.1 NC_006150.1 + 59154 0.67 0.980589
Target:  5'- aCUAaGGUGGCGAUuuaUGUgGCCACg -3'
miRNA:   3'- -GAUgCCACUGCUGuugGCAgCGGUGg -5'
29337 5' -54.1 NC_006150.1 + 71002 0.67 0.979961
Target:  5'- aUGCGGUGGgccuccucguuucgUGugGACCuG-CGCUACCu -3'
miRNA:   3'- gAUGCCACU--------------GCugUUGG-CaGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.