miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29339 3' -51.4 NC_006150.1 + 158896 0.66 0.996626
Target:  5'- aAGCCAUCAUGauuUGCAUCugucaGGu--CAUCAu -3'
miRNA:   3'- -UCGGUAGUAC---ACGUAG-----CCuauGUGGU- -5'
29339 3' -51.4 NC_006150.1 + 70711 0.66 0.99579
Target:  5'- uGGCUggCAUGUGCAccugCGGAgcgagaggcgguCACCAu -3'
miRNA:   3'- -UCGGuaGUACACGUa---GCCUau----------GUGGU- -5'
29339 3' -51.4 NC_006150.1 + 117327 0.66 0.994636
Target:  5'- cGCCAUCAUGgaGUuUCGGAcgUGCcCCGc -3'
miRNA:   3'- uCGGUAGUACa-CGuAGCCU--AUGuGGU- -5'
29339 3' -51.4 NC_006150.1 + 295 0.66 0.994636
Target:  5'- cGCCGUCGUGccgagGCcgCGGAggacgGCugCc -3'
miRNA:   3'- uCGGUAGUACa----CGuaGCCUa----UGugGu -5'
29339 3' -51.4 NC_006150.1 + 128816 0.66 0.994636
Target:  5'- cGUCGUUAUGUGCGguggagCGGAUGguggaacuuucCACCc -3'
miRNA:   3'- uCGGUAGUACACGUa-----GCCUAU-----------GUGGu -5'
29339 3' -51.4 NC_006150.1 + 57781 0.66 0.994636
Target:  5'- aAGCCAUCA-GUGuCAUUcGAUGCAUUg -3'
miRNA:   3'- -UCGGUAGUaCAC-GUAGcCUAUGUGGu -5'
29339 3' -51.4 NC_006150.1 + 134471 0.67 0.99061
Target:  5'- aAGCCAUCuccuccGCGUCGGAggugGCCAu -3'
miRNA:   3'- -UCGGUAGuaca--CGUAGCCUaug-UGGU- -5'
29339 3' -51.4 NC_006150.1 + 116401 0.67 0.987857
Target:  5'- -aCCGUagaCAUGgGCcUCGGAUACACCu -3'
miRNA:   3'- ucGGUA---GUACaCGuAGCCUAUGUGGu -5'
29339 3' -51.4 NC_006150.1 + 204318 0.67 0.987857
Target:  5'- -uCCAUCuucc-CAUCGGGUGCGCCAc -3'
miRNA:   3'- ucGGUAGuacacGUAGCCUAUGUGGU- -5'
29339 3' -51.4 NC_006150.1 + 137283 0.67 0.987857
Target:  5'- uGCCAggUCcUGUGUGUCGGuUGCaaGCCAg -3'
miRNA:   3'- uCGGU--AGuACACGUAGCCuAUG--UGGU- -5'
29339 3' -51.4 NC_006150.1 + 40685 0.7 0.960455
Target:  5'- uGGCCGUCu----CGUCgGGAUACACCAc -3'
miRNA:   3'- -UCGGUAGuacacGUAG-CCUAUGUGGU- -5'
29339 3' -51.4 NC_006150.1 + 31260 0.7 0.944108
Target:  5'- cGGCgAUCcacGUGagaGCAUCGGAgUACACCAc -3'
miRNA:   3'- -UCGgUAG---UACa--CGUAGCCU-AUGUGGU- -5'
29339 3' -51.4 NC_006150.1 + 161141 0.72 0.885458
Target:  5'- uAGCCGggaaggGUGCAUuggaacgCGGAUACACCGu -3'
miRNA:   3'- -UCGGUagua--CACGUA-------GCCUAUGUGGU- -5'
29339 3' -51.4 NC_006150.1 + 172220 1.09 0.009677
Target:  5'- cAGCCAUCAUGUGCAUCGGAUACACCAa -3'
miRNA:   3'- -UCGGUAGUACACGUAGCCUAUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.