miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29339 5' -46.6 NC_006150.1 + 200291 0.66 0.999993
Target:  5'- gGUCAcgGcGUCCAGUGCCC-UGAUc-- -3'
miRNA:   3'- -UAGUuaU-UAGGUCAUGGGuACUAcgg -5'
29339 5' -46.6 NC_006150.1 + 81151 0.66 0.999993
Target:  5'- cUCugggGGUCC--UGCCCAUGAaugGCCg -3'
miRNA:   3'- uAGuua-UUAGGucAUGGGUACUa--CGG- -5'
29339 5' -46.6 NC_006150.1 + 142978 0.66 0.999986
Target:  5'- -gCGAUGGUCaucgccGUGCgggaCGUGAUGCCg -3'
miRNA:   3'- uaGUUAUUAGgu----CAUGg---GUACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 78295 0.66 0.999986
Target:  5'- gAUCAAU-GUCCAGagaaaUCAUGGUGUCu -3'
miRNA:   3'- -UAGUUAuUAGGUCaug--GGUACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 134931 0.66 0.999986
Target:  5'- -aCAAUGagaGUgCGGUACUgaAUGGUGCCu -3'
miRNA:   3'- uaGUUAU---UAgGUCAUGGg-UACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 8573 0.66 0.99998
Target:  5'- -aCAGgaGAUCCAGUagaauGCCCAUGAUaaggGCg -3'
miRNA:   3'- uaGUUa-UUAGGUCA-----UGGGUACUA----CGg -5'
29339 5' -46.6 NC_006150.1 + 41111 0.66 0.999973
Target:  5'- cUUGAgaugGAUCCGaugcauUGCCCGUGAUGCa -3'
miRNA:   3'- uAGUUa---UUAGGUc-----AUGGGUACUACGg -5'
29339 5' -46.6 NC_006150.1 + 140675 0.68 0.999887
Target:  5'- -gCAAgacGUCCAGUAUUCA-GGUGCUg -3'
miRNA:   3'- uaGUUau-UAGGUCAUGGGUaCUACGG- -5'
29339 5' -46.6 NC_006150.1 + 134153 0.68 0.999691
Target:  5'- --------aCCGGUcuACCCAUGGUGUCu -3'
miRNA:   3'- uaguuauuaGGUCA--UGGGUACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 168712 0.69 0.999609
Target:  5'- -aCAGUAGcagcaugucccUCCGGggugGCUCAUGGUGUCu -3'
miRNA:   3'- uaGUUAUU-----------AGGUCa---UGGGUACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 116469 0.69 0.999389
Target:  5'- -cCAGU--UCCAGUACUCGUG-UGCg -3'
miRNA:   3'- uaGUUAuuAGGUCAUGGGUACuACGg -5'
29339 5' -46.6 NC_006150.1 + 160930 0.7 0.998859
Target:  5'- gAUCGGUc--CCGGUACCUucuAUGGUGCUc -3'
miRNA:   3'- -UAGUUAuuaGGUCAUGGG---UACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 146582 0.7 0.998859
Target:  5'- uUCAAUGA-CCGcGUGCuCCAUGAaaUGCUg -3'
miRNA:   3'- uAGUUAUUaGGU-CAUG-GGUACU--ACGG- -5'
29339 5' -46.6 NC_006150.1 + 215001 0.7 0.998612
Target:  5'- gGUUggUuGUCCaaugAGUGCCgGUGAUGCa -3'
miRNA:   3'- -UAGuuAuUAGG----UCAUGGgUACUACGg -5'
29339 5' -46.6 NC_006150.1 + 123179 0.71 0.996591
Target:  5'- -cCAGgucAUCCgAGUACUUGUGGUGCCu -3'
miRNA:   3'- uaGUUau-UAGG-UCAUGGGUACUACGG- -5'
29339 5' -46.6 NC_006150.1 + 172254 1.13 0.018896
Target:  5'- aAUCAAUAAUCCAGUACCCAUGAUGCCg -3'
miRNA:   3'- -UAGUUAUUAGGUCAUGGGUACUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.