miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2934 3' -56.7 NC_001493.1 + 26449 0.66 0.849569
Target:  5'- cCCCAGGGGUauccGUCAGG-GGUAGCg -3'
miRNA:   3'- uGGGUUCUCAccu-CGGUCCgCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 110716 0.66 0.815837
Target:  5'- gACCgUGAGGGUGGGGUgCAGGUGcGgcACg -3'
miRNA:   3'- -UGG-GUUCUCACCUCG-GUCCGC-CauUG- -5'
2934 3' -56.7 NC_001493.1 + 27500 0.67 0.806953
Target:  5'- cACCCGcuuGUGGcuauGCCGGGCGGccGGCc -3'
miRNA:   3'- -UGGGUucuCACCu---CGGUCCGCCa-UUG- -5'
2934 3' -56.7 NC_001493.1 + 128258 0.67 0.77936
Target:  5'- gACCCGGGAGUcucccacgggGGAGCCucaccGGGauCGGgcGCu -3'
miRNA:   3'- -UGGGUUCUCA----------CCUCGG-----UCC--GCCauUG- -5'
2934 3' -56.7 NC_001493.1 + 12704 0.67 0.77936
Target:  5'- gACCCGGGAGUcucccacgggGGAGCCucaccGGGauCGGgcGCu -3'
miRNA:   3'- -UGGGUUCUCA----------CCUCGG-----UCC--GCCauUG- -5'
2934 3' -56.7 NC_001493.1 + 92702 0.67 0.769877
Target:  5'- cAUCCugGAGgaaaccGGGCuCGGGUGGUAACa -3'
miRNA:   3'- -UGGGuuCUCac----CUCG-GUCCGCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 99693 0.67 0.760269
Target:  5'- aACCCAcGGAgGUGGGcCCAcGGUGGUGAa -3'
miRNA:   3'- -UGGGU-UCU-CACCUcGGU-CCGCCAUUg -5'
2934 3' -56.7 NC_001493.1 + 117535 0.68 0.750543
Target:  5'- gGCCgucaAGGAGUGGcuGUCuacggaAGGCGGUGACc -3'
miRNA:   3'- -UGGg---UUCUCACCu-CGG------UCCGCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 1981 0.68 0.750543
Target:  5'- gGCCgucaAGGAGUGGcuGUCuacggaAGGCGGUGACc -3'
miRNA:   3'- -UGGg---UUCUCACCu-CGG------UCCGCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 79105 0.68 0.750543
Target:  5'- cGCaCCAGGAGguuauggaccgGGAGCacguCGGGCGGUcuGACc -3'
miRNA:   3'- -UG-GGUUCUCa----------CCUCG----GUCCGCCA--UUG- -5'
2934 3' -56.7 NC_001493.1 + 35786 0.68 0.740711
Target:  5'- gACCguAGAGUaguucGGAGCUGcGuGCGGUGACc -3'
miRNA:   3'- -UGGguUCUCA-----CCUCGGU-C-CGCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 115706 0.68 0.740711
Target:  5'- cCCCAAG---GGGGCguGGgGGUGGCg -3'
miRNA:   3'- uGGGUUCucaCCUCGguCCgCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 61255 0.68 0.720762
Target:  5'- uACCCAGGAuccaUGGAcccagGCCGGGauGUGACu -3'
miRNA:   3'- -UGGGUUCUc---ACCU-----CGGUCCgcCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 123480 0.69 0.680001
Target:  5'- cCCCGcGAGaGGAGCguGGCGGg--- -3'
miRNA:   3'- uGGGUuCUCaCCUCGguCCGCCauug -5'
2934 3' -56.7 NC_001493.1 + 7926 0.69 0.680001
Target:  5'- cCCCGcGAGaGGAGCguGGCGGg--- -3'
miRNA:   3'- uGGGUuCUCaCCUCGguCCGCCauug -5'
2934 3' -56.7 NC_001493.1 + 87020 0.69 0.65934
Target:  5'- gACCCGAcGGUGGcgcuGCgGGuGUGGUGACa -3'
miRNA:   3'- -UGGGUUcUCACCu---CGgUC-CGCCAUUG- -5'
2934 3' -56.7 NC_001493.1 + 102153 0.7 0.638588
Target:  5'- cACCCGAGGG-GGAGCCuu-CGGUGc- -3'
miRNA:   3'- -UGGGUUCUCaCCUCGGuccGCCAUug -5'
2934 3' -56.7 NC_001493.1 + 31351 0.72 0.515782
Target:  5'- -gCCGAGAgGUGG-GCgCGGGCGGUuGCa -3'
miRNA:   3'- ugGGUUCU-CACCuCG-GUCCGCCAuUG- -5'
2934 3' -56.7 NC_001493.1 + 91693 0.73 0.448518
Target:  5'- gGCCCGAGGGgGGAG-CAGGUGGaggAACc -3'
miRNA:   3'- -UGGGUUCUCaCCUCgGUCCGCCa--UUG- -5'
2934 3' -56.7 NC_001493.1 + 3232 0.76 0.322702
Target:  5'- aGCCCGAG-GUGGAGUCagAGGCGGa--- -3'
miRNA:   3'- -UGGGUUCuCACCUCGG--UCCGCCauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.