miRNA: 3'- -GGCGGGggC-GGCCuCUUGGG-----UGACUa -5'
miRNA: 3'- -GGCGGGGGC-GGC-CU----CUUGGGUG-ACUA- -5'
miRNA: 3'- gGCGGG----GGCgGCCUCUUGGgUGACUa -5'
miRNA: 3'- -GGCGGG---------GGCGGCCUCuUGGGUGAcua -5'
miRNA: 3'- -GGCGGGGGCGGCCUCUUGGGUGACUA- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2934 | 5' | -61.9 | NC_001493.1 | + | 5390 | 0.69 | 0.464238 |
|
Target: 5'- cCCGCCCaaGuCCGG-GAGCCCcaccuACUGGa -3' miRNA: 3'- -GGCGGGggC-GGCCuCUUGGG-----UGACUa -5' |
|||||||
| 2934 | 5' | -61.9 | NC_001493.1 | + | 26945 | 0.69 | 0.437666 |
|
Target: 5'- cCCGCUCCCGuCCGuGAugaaGGAUCCGCaUGAUg -3' miRNA: 3'- -GGCGGGGGC-GGC-CU----CUUGGGUG-ACUA- -5' |
|||||||
| 2934 | 5' | -61.9 | NC_001493.1 | + | 91760 | 0.71 | 0.3335 |
|
Target: 5'- gCGCCCgcgaCCGgCGGAGGACCaGCUGGa -3' miRNA: 3'- gGCGGG----GGCgGCCUCUUGGgUGACUa -5' |
|||||||
| 2934 | 5' | -61.9 | NC_001493.1 | + | 107060 | 0.76 | 0.173839 |
|
Target: 5'- gCCGCCCucaggucgaCCGCCGGGGcGCCCGCUu-- -3' miRNA: 3'- -GGCGGG---------GGCGGCCUCuUGGGUGAcua -5' |
|||||||
| 2934 | 5' | -61.9 | NC_001493.1 | + | 62495 | 1.08 | 0.000951 |
|
Target: 5'- aCCGCCCCCGCCGGAGAACCCACUGAUa -3' miRNA: 3'- -GGCGGGGGCGGCCUCUUGGGUGACUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home