miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29340 3' -59.6 NC_006150.1 + 88374 0.66 0.870969
Target:  5'- cGGCGgGGuGGGguugucgagggGGAGGGGGC--GGCg -3'
miRNA:   3'- cCUGCgCC-CCCa----------UCUCUCCCGgaUCG- -5'
29340 3' -59.6 NC_006150.1 + 850 0.66 0.856686
Target:  5'- cGGGCGcCGGcGGuGUAGAcGGuGuGGCCgcgAGCg -3'
miRNA:   3'- -CCUGC-GCC-CC-CAUCU-CU-C-CCGGa--UCG- -5'
29340 3' -59.6 NC_006150.1 + 72123 0.66 0.856686
Target:  5'- cGGCGCGGGcGGUacacGGGGAGGauCCUGa- -3'
miRNA:   3'- cCUGCGCCC-CCA----UCUCUCCc-GGAUcg -5'
29340 3' -59.6 NC_006150.1 + 94799 0.66 0.841676
Target:  5'- gGGAUGCGGGaGGaa-AGGGGGauCCgAGCa -3'
miRNA:   3'- -CCUGCGCCC-CCaucUCUCCC--GGaUCG- -5'
29340 3' -59.6 NC_006150.1 + 92368 0.66 0.841676
Target:  5'- uGGGC-CGGGcGGUGGGGAuucGGGCg-AGUc -3'
miRNA:   3'- -CCUGcGCCC-CCAUCUCU---CCCGgaUCG- -5'
29340 3' -59.6 NC_006150.1 + 601 0.66 0.833912
Target:  5'- -cGCGUGGaGGGagGGGGaAGGGCCgcguguucuUGGCa -3'
miRNA:   3'- ccUGCGCC-CCCa-UCUC-UCCCGG---------AUCG- -5'
29340 3' -59.6 NC_006150.1 + 70920 0.67 0.792766
Target:  5'- aGGAggUGUGGGcGGUGGAaAGGGCggcggAGCg -3'
miRNA:   3'- -CCU--GCGCCC-CCAUCUcUCCCGga---UCG- -5'
29340 3' -59.6 NC_006150.1 + 1737 0.67 0.784119
Target:  5'- gGGugGCGGc---GGAGGGGGgUUGGCg -3'
miRNA:   3'- -CCugCGCCcccaUCUCUCCCgGAUCG- -5'
29340 3' -59.6 NC_006150.1 + 139389 0.68 0.77535
Target:  5'- cGGACGguccgccgcCuGGGGUAcGGGAGGGCaucaGGCg -3'
miRNA:   3'- -CCUGC---------GcCCCCAU-CUCUCCCGga--UCG- -5'
29340 3' -59.6 NC_006150.1 + 182601 0.68 0.766466
Target:  5'- ---aGCGGGuGGUcgcacaGGAGGGaGGCCgGGCa -3'
miRNA:   3'- ccugCGCCC-CCA------UCUCUC-CCGGaUCG- -5'
29340 3' -59.6 NC_006150.1 + 81427 0.68 0.739205
Target:  5'- gGGGCgGCGGcGGcAGAGGGGGUg-GGCg -3'
miRNA:   3'- -CCUG-CGCCcCCaUCUCUCCCGgaUCG- -5'
29340 3' -59.6 NC_006150.1 + 132246 0.69 0.673036
Target:  5'- gGGACGagaCGGGGGaugAGAacGAGGaCCUGGUa -3'
miRNA:   3'- -CCUGC---GCCCCCa--UCU--CUCCcGGAUCG- -5'
29340 3' -59.6 NC_006150.1 + 152739 0.7 0.653749
Target:  5'- cGACGCGGuagaGGUugaaGGGGAGGGCUcgGGUg -3'
miRNA:   3'- cCUGCGCCc---CCA----UCUCUCCCGGa-UCG- -5'
29340 3' -59.6 NC_006150.1 + 182856 0.7 0.653749
Target:  5'- aGGGgGUGGGGGguguuuugGGcGGGGGGCUgaaaaUGGCa -3'
miRNA:   3'- -CCUgCGCCCCCa-------UC-UCUCCCGG-----AUCG- -5'
29340 3' -59.6 NC_006150.1 + 13160 0.7 0.644078
Target:  5'- uGGugGCGGucGGUAGAGGGcGCCUuGUc -3'
miRNA:   3'- -CCugCGCCc-CCAUCUCUCcCGGAuCG- -5'
29340 3' -59.6 NC_006150.1 + 34541 0.7 0.615044
Target:  5'- gGGAgGCGGuGGGUAcGAGcacgugcucuacGGGaGUCUGGCg -3'
miRNA:   3'- -CCUgCGCC-CCCAU-CUC------------UCC-CGGAUCG- -5'
29340 3' -59.6 NC_006150.1 + 73492 0.71 0.595734
Target:  5'- cGGAgagauaguuUGCaGGGGGUgGGAGAcGGGUgUAGCg -3'
miRNA:   3'- -CCU---------GCG-CCCCCA-UCUCU-CCCGgAUCG- -5'
29340 3' -59.6 NC_006150.1 + 195254 0.71 0.576519
Target:  5'- aGGCGCGGGGuccuucacacaGUcuacaguuAGGuAGGGCCUGGCu -3'
miRNA:   3'- cCUGCGCCCC-----------CA--------UCUcUCCCGGAUCG- -5'
29340 3' -59.6 NC_006150.1 + 181271 0.78 0.25331
Target:  5'- cGGACGCGGaGGGcgGGAGAGGcggcuGCCcugGGCg -3'
miRNA:   3'- -CCUGCGCC-CCCa-UCUCUCC-----CGGa--UCG- -5'
29340 3' -59.6 NC_006150.1 + 180508 1.14 0.001103
Target:  5'- aGGACGCGGGGGUAGAGAGGGCCUAGCa -3'
miRNA:   3'- -CCUGCGCCCCCAUCUCUCCCGGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.