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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29340 | 5' | -56 | NC_006150.1 | + | 70981 | 0.66 | 0.940049 |
Target: 5'- -cGUguGGACCUGcGCUACCUcaccaUCGGa- -3' miRNA: 3'- cuCGauCCUGGAC-CGAUGGA-----AGCCaa -5' |
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29340 | 5' | -56 | NC_006150.1 | + | 152029 | 0.67 | 0.888478 |
Target: 5'- aAGCgguggGGGugCUGGUauUGCCUgCGGUg -3' miRNA: 3'- cUCGa----UCCugGACCG--AUGGAaGCCAa -5' |
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29340 | 5' | -56 | NC_006150.1 | + | 95445 | 0.68 | 0.874491 |
Target: 5'- aGGau-GGACCUGGCgcggcGCCUUUGGg- -3' miRNA: 3'- cUCgauCCUGGACCGa----UGGAAGCCaa -5' |
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29340 | 5' | -56 | NC_006150.1 | + | 219764 | 0.7 | 0.783575 |
Target: 5'- cGGC-AGGACCUGGCgugGCCg-CGGg- -3' miRNA: 3'- cUCGaUCCUGGACCGa--UGGaaGCCaa -5' |
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29340 | 5' | -56 | NC_006150.1 | + | 180542 | 1.05 | 0.006527 |
Target: 5'- aGAGCUAGGACCUGGCUACCUUCGGUUc -3' miRNA: 3'- -CUCGAUCCUGGACCGAUGGAAGCCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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