miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29341 3' -47.4 NC_006150.1 + 110888 0.66 0.999988
Target:  5'- aGAAAGAugauGGACGGCCGaUGgaccugGACACgaaGGCc -3'
miRNA:   3'- -CUUUUU----UCUGUUGGC-GCa-----CUGUG---CCG- -5'
29341 3' -47.4 NC_006150.1 + 42502 0.66 0.999988
Target:  5'- aGAAcuGGGACGAUUGUuuaguagGUGACAaaaGGCu -3'
miRNA:   3'- -CUUuuUUCUGUUGGCG-------CACUGUg--CCG- -5'
29341 3' -47.4 NC_006150.1 + 143803 0.66 0.999988
Target:  5'- cAGAAGAGGCGccGCUGC-UGGCGCGccGCc -3'
miRNA:   3'- cUUUUUUCUGU--UGGCGcACUGUGC--CG- -5'
29341 3' -47.4 NC_006150.1 + 314 0.66 0.999988
Target:  5'- --cGGAGGACGGCUGCccgGGguUGGCg -3'
miRNA:   3'- cuuUUUUCUGUUGGCGca-CUguGCCG- -5'
29341 3' -47.4 NC_006150.1 + 176 0.66 0.999984
Target:  5'- -------aGCAggGCCGCaGUGACaccGCGGCa -3'
miRNA:   3'- cuuuuuucUGU--UGGCG-CACUG---UGCCG- -5'
29341 3' -47.4 NC_006150.1 + 91086 0.66 0.999984
Target:  5'- gGAGAAAAGGCAacgacuGCCGUuucgGUGuGCuGCGGUg -3'
miRNA:   3'- -CUUUUUUCUGU------UGGCG----CAC-UG-UGCCG- -5'
29341 3' -47.4 NC_006150.1 + 69222 0.66 0.999984
Target:  5'- cGAGcuAGACAugACUGcCGUGACA-GGCc -3'
miRNA:   3'- cUUUuuUCUGU--UGGC-GCACUGUgCCG- -5'
29341 3' -47.4 NC_006150.1 + 39395 0.66 0.999984
Target:  5'- uGAcGAGAGuCGACCGCGcuugguucGACggaagagaGCGGCg -3'
miRNA:   3'- -CUuUUUUCuGUUGGCGCa-------CUG--------UGCCG- -5'
29341 3' -47.4 NC_006150.1 + 77420 0.66 0.999978
Target:  5'- uGAAcAAGGGCAcagcauCUGCGUGAauguguUugGGCa -3'
miRNA:   3'- -CUUuUUUCUGUu-----GGCGCACU------GugCCG- -5'
29341 3' -47.4 NC_006150.1 + 103222 0.66 0.999978
Target:  5'- --cGAGAG-CGugCGCaGUGGCugGGa -3'
miRNA:   3'- cuuUUUUCuGUugGCG-CACUGugCCg -5'
29341 3' -47.4 NC_006150.1 + 91795 0.66 0.999978
Target:  5'- uGGAGAAGGAUuucucaaucacaGACgGCGUagcaggGACGCGGg -3'
miRNA:   3'- -CUUUUUUCUG------------UUGgCGCA------CUGUGCCg -5'
29341 3' -47.4 NC_006150.1 + 151283 0.66 0.999978
Target:  5'- uGAGuAAGAGACAACCGaUGUGGagacUACuGGUg -3'
miRNA:   3'- -CUU-UUUUCUGUUGGC-GCACU----GUG-CCG- -5'
29341 3' -47.4 NC_006150.1 + 140855 0.66 0.999978
Target:  5'- gGAAGAAAGGCcACUGaucuGUG-CAgGGCa -3'
miRNA:   3'- -CUUUUUUCUGuUGGCg---CACuGUgCCG- -5'
29341 3' -47.4 NC_006150.1 + 40485 0.66 0.999978
Target:  5'- aAAAAcAGACAGCCGUGcaGAUACGaaGCc -3'
miRNA:   3'- cUUUUuUCUGUUGGCGCa-CUGUGC--CG- -5'
29341 3' -47.4 NC_006150.1 + 171552 0.66 0.999978
Target:  5'- -------uGCAGCC-CGUgGACACGGUg -3'
miRNA:   3'- cuuuuuucUGUUGGcGCA-CUGUGCCG- -5'
29341 3' -47.4 NC_006150.1 + 108167 0.66 0.999978
Target:  5'- -cGAGAAGGC-ACCGCGgcGC-CGGUg -3'
miRNA:   3'- cuUUUUUCUGuUGGCGCacUGuGCCG- -5'
29341 3' -47.4 NC_006150.1 + 101551 0.66 0.999978
Target:  5'- -cGGAAAGGC--CCGCacGAUGCGGCg -3'
miRNA:   3'- cuUUUUUCUGuuGGCGcaCUGUGCCG- -5'
29341 3' -47.4 NC_006150.1 + 125981 0.66 0.999975
Target:  5'- ---cGAAGACGACCGCacgucuaaaacgGACGagUGGCa -3'
miRNA:   3'- cuuuUUUCUGUUGGCGca----------CUGU--GCCG- -5'
29341 3' -47.4 NC_006150.1 + 207710 0.66 0.99997
Target:  5'- ---cAGGGAgAGCCagGCcccUGGCACGGCg -3'
miRNA:   3'- cuuuUUUCUgUUGG--CGc--ACUGUGCCG- -5'
29341 3' -47.4 NC_006150.1 + 189076 0.66 0.99997
Target:  5'- uGAAGGAAGAUAugCGaccauuGCAUGGCu -3'
miRNA:   3'- -CUUUUUUCUGUugGCgcac--UGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.