miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29341 5' -49.9 NC_006150.1 + 116282 0.66 0.99955
Target:  5'- -aGAGcaGCAUGucgaccuCAAACGUGUCaguCCGCa -3'
miRNA:   3'- cgCUC--CGUAUu------GUUUGUACAGg--GGCG- -5'
29341 5' -49.9 NC_006150.1 + 84612 0.66 0.99955
Target:  5'- --aAGGCAguauugUAACAcguauggcAACAUGUCCcgCCGCa -3'
miRNA:   3'- cgcUCCGU------AUUGU--------UUGUACAGG--GGCG- -5'
29341 5' -49.9 NC_006150.1 + 82456 0.66 0.99955
Target:  5'- uCGuccGCGUAACAGACGgcGUCCuCCGUu -3'
miRNA:   3'- cGCuc-CGUAUUGUUUGUa-CAGG-GGCG- -5'
29341 5' -49.9 NC_006150.1 + 140655 0.66 0.999519
Target:  5'- aCGGGGCGcGACGacGACAcgGUcaucgacaucuuucCCCCGCc -3'
miRNA:   3'- cGCUCCGUaUUGU--UUGUa-CA--------------GGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 27014 0.66 0.999487
Target:  5'- cGCgGGGGCGUccgaagaagugaucgAACAGAgCGUGcuccauuuUCCCCGUu -3'
miRNA:   3'- -CG-CUCCGUA---------------UUGUUU-GUAC--------AGGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 87826 0.66 0.999442
Target:  5'- uGCGAGGUGggGGCuGGGCAUG-CagaCCGCu -3'
miRNA:   3'- -CGCUCCGUa-UUG-UUUGUACaGg--GGCG- -5'
29341 5' -49.9 NC_006150.1 + 93275 0.66 0.999442
Target:  5'- -aGAGGCuaguaGUGACGcGCGUGUggcCCuuGCu -3'
miRNA:   3'- cgCUCCG-----UAUUGUuUGUACA---GGggCG- -5'
29341 5' -49.9 NC_006150.1 + 183815 0.66 0.999313
Target:  5'- aGCGAcuccguaaGGCAUGcCcccGCcaGUCCCCGCa -3'
miRNA:   3'- -CGCU--------CCGUAUuGuu-UGuaCAGGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 119234 0.66 0.999313
Target:  5'- uGCGcAGGCugu-CGAACAUuucuUCCCCGg -3'
miRNA:   3'- -CGC-UCCGuauuGUUUGUAc---AGGGGCg -5'
29341 5' -49.9 NC_006150.1 + 106839 0.66 0.999158
Target:  5'- gGCGGGGUAcGACGcggGACA--UCCCCa- -3'
miRNA:   3'- -CGCUCCGUaUUGU---UUGUacAGGGGcg -5'
29341 5' -49.9 NC_006150.1 + 132436 0.66 0.998975
Target:  5'- gGCGGuGGCcgAGgAGuu-UGUCUCCGCg -3'
miRNA:   3'- -CGCU-CCGuaUUgUUuguACAGGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 126161 0.67 0.998758
Target:  5'- uGCGAGGUugcACAAuuuCAUGcCCUCGg -3'
miRNA:   3'- -CGCUCCGuauUGUUu--GUACaGGGGCg -5'
29341 5' -49.9 NC_006150.1 + 84881 0.67 0.998504
Target:  5'- uGCGGGGCuu-GCGgcggGACAUGUUgCCa- -3'
miRNA:   3'- -CGCUCCGuauUGU----UUGUACAGgGGcg -5'
29341 5' -49.9 NC_006150.1 + 206518 0.67 0.998504
Target:  5'- -aGAuGGCG--GCGAAgAUGUCaCCUGCg -3'
miRNA:   3'- cgCU-CCGUauUGUUUgUACAG-GGGCG- -5'
29341 5' -49.9 NC_006150.1 + 108730 0.67 0.998208
Target:  5'- aGUGAGGaaCGUGaagucggucGCAAACGUGUaaCCGCc -3'
miRNA:   3'- -CGCUCC--GUAU---------UGUUUGUACAggGGCG- -5'
29341 5' -49.9 NC_006150.1 + 104988 0.67 0.998208
Target:  5'- cGCGGGGUcaAUGAUA---AUGUaCCCGCa -3'
miRNA:   3'- -CGCUCCG--UAUUGUuugUACAgGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 4193 0.67 0.998208
Target:  5'- uGCGGucuGuGCGUGACAGGCAgcUGUCCgUUGCc -3'
miRNA:   3'- -CGCU---C-CGUAUUGUUUGU--ACAGG-GGCG- -5'
29341 5' -49.9 NC_006150.1 + 215911 0.67 0.998208
Target:  5'- gGCGuuGGCAUcuuGACGAuagauuaucggaGCAUG-CUCCGCu -3'
miRNA:   3'- -CGCu-CCGUA---UUGUU------------UGUACaGGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 769 0.67 0.997507
Target:  5'- aGCGAGcGCG-AGCAAACAgcgccaGgcugccggcguccugCCCCGCa -3'
miRNA:   3'- -CGCUC-CGUaUUGUUUGUa-----Ca--------------GGGGCG- -5'
29341 5' -49.9 NC_006150.1 + 103714 0.68 0.996855
Target:  5'- cGCG-GGCAUGACGGccGCggGgaguuuggucauucUCCUCGCg -3'
miRNA:   3'- -CGCuCCGUAUUGUU--UGuaC--------------AGGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.