miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29342 3' -54.5 NC_006150.1 + 149222 0.66 0.980636
Target:  5'- cUCGGccccgcaacGGUUCccguGGAGgaggCGGCGGGCGACg -3'
miRNA:   3'- cAGCC---------UCAGG----UCUCa---GUUGCUCGCUG- -5'
29342 3' -54.5 NC_006150.1 + 114040 0.66 0.973563
Target:  5'- uUCGGGGUCgCGGuG-CGGgcUGAGCGGCu -3'
miRNA:   3'- cAGCCUCAG-GUCuCaGUU--GCUCGCUG- -5'
29342 3' -54.5 NC_006150.1 + 126399 0.66 0.970834
Target:  5'- aGUCGaucgaaauacGAGUCCAGAGUCAGCc-GCa-- -3'
miRNA:   3'- -CAGC----------CUCAGGUCUCAGUUGcuCGcug -5'
29342 3' -54.5 NC_006150.1 + 84717 0.67 0.964783
Target:  5'- cGUCGGuacAGUgCGGAGUCAAagGAGaCGAa -3'
miRNA:   3'- -CAGCC---UCAgGUCUCAGUUg-CUC-GCUg -5'
29342 3' -54.5 NC_006150.1 + 37133 0.67 0.961448
Target:  5'- -aCGGAGcCCAGAGgagaaaAACaGAaGCGACg -3'
miRNA:   3'- caGCCUCaGGUCUCag----UUG-CU-CGCUG- -5'
29342 3' -54.5 NC_006150.1 + 109335 0.67 0.950151
Target:  5'- gGUgGGAGgCCGGuGUCAAUGAcGUGAUc -3'
miRNA:   3'- -CAgCCUCaGGUCuCAGUUGCU-CGCUG- -5'
29342 3' -54.5 NC_006150.1 + 455 0.68 0.945941
Target:  5'- --gGGGGcCCGGGGgucgCGGCGGGgGGCg -3'
miRNA:   3'- cagCCUCaGGUCUCa---GUUGCUCgCUG- -5'
29342 3' -54.5 NC_006150.1 + 137351 0.69 0.910034
Target:  5'- cUUGuGAGUCCuuucGGGGUUGACGAGCagGACg -3'
miRNA:   3'- cAGC-CUCAGG----UCUCAGUUGCUCG--CUG- -5'
29342 3' -54.5 NC_006150.1 + 92351 0.69 0.891198
Target:  5'- gGUCGGcGUCCcGAGUCugggcCGGGCGGu -3'
miRNA:   3'- -CAGCCuCAGGuCUCAGuu---GCUCGCUg -5'
29342 3' -54.5 NC_006150.1 + 169726 0.7 0.855452
Target:  5'- -cUGGAG-CgCAGAGUaCAAUGAGUGGCa -3'
miRNA:   3'- caGCCUCaG-GUCUCA-GUUGCUCGCUG- -5'
29342 3' -54.5 NC_006150.1 + 47052 0.76 0.542901
Target:  5'- -gCGGAgaguGUCCAGAGUUAGagaGGGCGACu -3'
miRNA:   3'- caGCCU----CAGGUCUCAGUUg--CUCGCUG- -5'
29342 3' -54.5 NC_006150.1 + 183794 1.09 0.005622
Target:  5'- aGUCGGAGUCCAGAGUCAACGAGCGACu -3'
miRNA:   3'- -CAGCCUCAGGUCUCAGUUGCUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.