miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29342 5' -63.7 NC_006150.1 + 76675 0.66 0.64737
Target:  5'- uUGCUCggCCGCgGGgaaUCCCC-CACUGGCa -3'
miRNA:   3'- uACGGG--GGCGgUC---AGGGGcGUGACUG- -5'
29342 5' -63.7 NC_006150.1 + 215604 0.66 0.64737
Target:  5'- cUGCCaCCUGUCAcuuUgCCCGuCACUGACu -3'
miRNA:   3'- uACGG-GGGCGGUc--AgGGGC-GUGACUG- -5'
29342 5' -63.7 NC_006150.1 + 183456 0.66 0.628105
Target:  5'- cUGCCCCUcaaaGGUCCCCGCAUg--- -3'
miRNA:   3'- uACGGGGGcgg-UCAGGGGCGUGacug -5'
29342 5' -63.7 NC_006150.1 + 88495 0.66 0.605006
Target:  5'- -cGcCCCCCGCCAGggcugcgcggccgcUCCCuggagaaCGCGCaUGGCu -3'
miRNA:   3'- uaC-GGGGGCGGUC--------------AGGG-------GCGUG-ACUG- -5'
29342 5' -63.7 NC_006150.1 + 208081 0.67 0.555417
Target:  5'- -aGCCaCCCGCCAGaacgucggaaaaaccUCgCCCGCAacaUGAa -3'
miRNA:   3'- uaCGG-GGGCGGUC---------------AG-GGGCGUg--ACUg -5'
29342 5' -63.7 NC_006150.1 + 75715 0.67 0.550704
Target:  5'- gAUGCCCugucuacccauugCCGCCAGUaucaCCCGCAUaGGu -3'
miRNA:   3'- -UACGGG-------------GGCGGUCAg---GGGCGUGaCUg -5'
29342 5' -63.7 NC_006150.1 + 88356 0.67 0.542251
Target:  5'- -cGCCCCCaCCugcgagcugugcGGUCCCCGggUUGGCc -3'
miRNA:   3'- uaCGGGGGcGG------------UCAGGGGCguGACUG- -5'
29342 5' -63.7 NC_006150.1 + 750 0.68 0.523629
Target:  5'- -cGCCaggCUGCCGGcguccugCCCCGCAgaGACg -3'
miRNA:   3'- uaCGGg--GGCGGUCa------GGGGCGUgaCUG- -5'
29342 5' -63.7 NC_006150.1 + 76115 0.68 0.522704
Target:  5'- uUGCCCaccugCGCCcGUCCCuCGCACccagaaaugaauuUGACg -3'
miRNA:   3'- uACGGGg----GCGGuCAGGG-GCGUG-------------ACUG- -5'
29342 5' -63.7 NC_006150.1 + 84639 0.69 0.443362
Target:  5'- cAUGuCCCgCCGCaAG-CCCCGCACaGACu -3'
miRNA:   3'- -UAC-GGG-GGCGgUCaGGGGCGUGaCUG- -5'
29342 5' -63.7 NC_006150.1 + 203103 0.69 0.443362
Target:  5'- gGUGCCCgcgCUGCCAGcUCCCGCGCUu-- -3'
miRNA:   3'- -UACGGG---GGCGGUCaGGGGCGUGAcug -5'
29342 5' -63.7 NC_006150.1 + 217666 0.77 0.146281
Target:  5'- cGUGUUCCCGCCAGUUUCCGCACauGCa -3'
miRNA:   3'- -UACGGGGGCGGUCAGGGGCGUGacUG- -5'
29342 5' -63.7 NC_006150.1 + 183830 1.07 0.001035
Target:  5'- cAUGCCCCCGCCAGUCCCCGCACUGACa -3'
miRNA:   3'- -UACGGGGGCGGUCAGGGGCGUGACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.