miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29344 5' -57.2 NC_006150.1 + 7900 0.66 0.926013
Target:  5'- --uUCUAUGGCaGUa--GCCUCaUGGGGu -3'
miRNA:   3'- cauAGAUACCG-CGgacCGGAG-ACCCC- -5'
29344 5' -57.2 NC_006150.1 + 149893 0.66 0.915127
Target:  5'- -cGUCUAUGcaucCGCCgaugGGUCUCUGGa- -3'
miRNA:   3'- caUAGAUACc---GCGGa---CCGGAGACCcc -5'
29344 5' -57.2 NC_006150.1 + 4090 0.66 0.915127
Target:  5'- -----cAUGGC-CCUGGCgugCUUUGGGGu -3'
miRNA:   3'- cauagaUACCGcGGACCG---GAGACCCC- -5'
29344 5' -57.2 NC_006150.1 + 137767 0.66 0.897115
Target:  5'- uUGUCUucGGCgguuugGCCUgGGCCUUUGGaGGa -3'
miRNA:   3'- cAUAGAuaCCG------CGGA-CCGGAGACC-CC- -5'
29344 5' -57.2 NC_006150.1 + 70824 0.67 0.877139
Target:  5'- -----cGUGGCGCCUGGCagaCUGaGGa -3'
miRNA:   3'- cauagaUACCGCGGACCGga-GAC-CCc -5'
29344 5' -57.2 NC_006150.1 + 148284 0.67 0.870061
Target:  5'- -----gAUGGCGCUggacagaugcgGGUgUCUGGGGg -3'
miRNA:   3'- cauagaUACCGCGGa----------CCGgAGACCCC- -5'
29344 5' -57.2 NC_006150.1 + 207243 0.68 0.823541
Target:  5'- -gAUgUGUGGCGUCUGGCCgaugacauagacUCccuucuuaccaUGGGGu -3'
miRNA:   3'- caUAgAUACCGCGGACCGG------------AG-----------ACCCC- -5'
29344 5' -57.2 NC_006150.1 + 172394 0.68 0.815171
Target:  5'- cGUAUCUuucacucUGGCaCCUGGCcCUCUGGc- -3'
miRNA:   3'- -CAUAGAu------ACCGcGGACCG-GAGACCcc -5'
29344 5' -57.2 NC_006150.1 + 88889 0.7 0.714472
Target:  5'- aGUAgCUAUGGCGCUggUGGCCUCcucgucccGGGcGg -3'
miRNA:   3'- -CAUaGAUACCGCGG--ACCGGAGa-------CCC-C- -5'
29344 5' -57.2 NC_006150.1 + 171229 0.71 0.685137
Target:  5'- gGUGUCUGUGGCGCggcGGCC--UGGGu -3'
miRNA:   3'- -CAUAGAUACCGCGga-CCGGagACCCc -5'
29344 5' -57.2 NC_006150.1 + 101333 0.75 0.435348
Target:  5'- --cUUUGUGGCGUUUaaccGGCUUCUGGGGg -3'
miRNA:   3'- cauAGAUACCGCGGA----CCGGAGACCCC- -5'
29344 5' -57.2 NC_006150.1 + 186334 1.11 0.00247
Target:  5'- aGUAUCUAUGGCGCCUGGCCUCUGGGGa -3'
miRNA:   3'- -CAUAGAUACCGCGGACCGGAGACCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.