miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29345 5' -47.1 NC_006150.1 + 40971 0.66 0.999976
Target:  5'- uGGUAACAugCCCUUGaauugagCCGUGu -3'
miRNA:   3'- cUUAUUGUugGGGAACgugua--GGUAC- -5'
29345 5' -47.1 NC_006150.1 + 87868 0.66 0.999968
Target:  5'- cAGUGGCGACCUgg-GCAUAgCCGUGg -3'
miRNA:   3'- cUUAUUGUUGGGgaaCGUGUaGGUAC- -5'
29345 5' -47.1 NC_006150.1 + 121431 0.66 0.999956
Target:  5'- cGAAUGACAGuCUggucuucaagaCCgUGCACGUCCAa- -3'
miRNA:   3'- -CUUAUUGUU-GG-----------GGaACGUGUAGGUac -5'
29345 5' -47.1 NC_006150.1 + 115454 0.66 0.999956
Target:  5'- aGAAUgGGCAGCgCCUccUGCAuCAUCCGg- -3'
miRNA:   3'- -CUUA-UUGUUGgGGA--ACGU-GUAGGUac -5'
29345 5' -47.1 NC_006150.1 + 130768 0.66 0.999956
Target:  5'- gGAAUuguuCAGCCCCgagcgccuUUGCGC-UCCAUa -3'
miRNA:   3'- -CUUAuu--GUUGGGG--------AACGUGuAGGUAc -5'
29345 5' -47.1 NC_006150.1 + 157616 0.66 0.999942
Target:  5'- cAAUAGCAGCCCCa-GCACcAUCUu-- -3'
miRNA:   3'- cUUAUUGUUGGGGaaCGUG-UAGGuac -5'
29345 5' -47.1 NC_006150.1 + 143889 0.66 0.999942
Target:  5'- cGAUAAUAACCCgUaucaaaagcUGgAUAUCCAUGu -3'
miRNA:   3'- cUUAUUGUUGGGgA---------ACgUGUAGGUAC- -5'
29345 5' -47.1 NC_006150.1 + 176643 0.66 0.999942
Target:  5'- aGGAUGuuGCAGCCCCagcuaCGCAUgCCGUGu -3'
miRNA:   3'- -CUUAU--UGUUGGGGaac--GUGUA-GGUAC- -5'
29345 5' -47.1 NC_006150.1 + 57351 0.67 0.999899
Target:  5'- ---cAAUAugCCCUUGC-CA-CCAUGu -3'
miRNA:   3'- cuuaUUGUugGGGAACGuGUaGGUAC- -5'
29345 5' -47.1 NC_006150.1 + 188745 0.67 0.999868
Target:  5'- cAGUAGCAuuCCCCaaUUGCACAaCCuAUGg -3'
miRNA:   3'- cUUAUUGUu-GGGG--AACGUGUaGG-UAC- -5'
29345 5' -47.1 NC_006150.1 + 108704 0.67 0.999868
Target:  5'- -cGUGAaauGCCCCcUGCACGUCaCAUu -3'
miRNA:   3'- cuUAUUgu-UGGGGaACGUGUAG-GUAc -5'
29345 5' -47.1 NC_006150.1 + 81064 0.68 0.99972
Target:  5'- cGAGUGACGuugugaAUCCgCgugcGCGCGUCCAUGu -3'
miRNA:   3'- -CUUAUUGU------UGGG-Gaa--CGUGUAGGUAC- -5'
29345 5' -47.1 NC_006150.1 + 154648 0.68 0.99972
Target:  5'- --uUGACAGCUCUauaUGUACAUCCAc- -3'
miRNA:   3'- cuuAUUGUUGGGGa--ACGUGUAGGUac -5'
29345 5' -47.1 NC_006150.1 + 38838 0.68 0.99972
Target:  5'- cAAUGACAGCCCC--GCAaggAUCCAg- -3'
miRNA:   3'- cUUAUUGUUGGGGaaCGUg--UAGGUac -5'
29345 5' -47.1 NC_006150.1 + 46592 0.68 0.999645
Target:  5'- ----uACAACCUCUUGUACAUUCc-- -3'
miRNA:   3'- cuuauUGUUGGGGAACGUGUAGGuac -5'
29345 5' -47.1 NC_006150.1 + 11091 0.69 0.998952
Target:  5'- -cGUAGCcAACCCUugUUGCuccCAUCCGUGu -3'
miRNA:   3'- cuUAUUG-UUGGGG--AACGu--GUAGGUAC- -5'
29345 5' -47.1 NC_006150.1 + 66340 0.69 0.998452
Target:  5'- gGAGUGGCGACCUCcauaGCGUCCAUc -3'
miRNA:   3'- -CUUAUUGUUGGGGaacgUGUAGGUAc -5'
29345 5' -47.1 NC_006150.1 + 187020 0.69 0.998452
Target:  5'- ----uACAACCaUUUGCACGUCCAg- -3'
miRNA:   3'- cuuauUGUUGGgGAACGUGUAGGUac -5'
29345 5' -47.1 NC_006150.1 + 59502 0.74 0.963064
Target:  5'- --uUGGCGAUCUCccGCGCGUCCAUGa -3'
miRNA:   3'- cuuAUUGUUGGGGaaCGUGUAGGUAC- -5'
29345 5' -47.1 NC_006150.1 + 58036 0.75 0.942105
Target:  5'- -cGUAGCGGCCCCUcGCACAUagAUGa -3'
miRNA:   3'- cuUAUUGUUGGGGAaCGUGUAggUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.