miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29347 3' -47.7 NC_006150.1 + 197549 0.66 0.999947
Target:  5'- gGCCGCugAacUUGCUcgcagccuGGCUGUGuAUACg -3'
miRNA:   3'- -CGGCGugU--AAUGAu-------UCGACAUcUGUG- -5'
29347 3' -47.7 NC_006150.1 + 152363 0.66 0.99993
Target:  5'- --aGCACGUUGucgGAGCUGUuGugGCa -3'
miRNA:   3'- cggCGUGUAAUga-UUCGACAuCugUG- -5'
29347 3' -47.7 NC_006150.1 + 70363 0.66 0.999879
Target:  5'- gGCCGCGCcg-ACUuGGCUGUGuAC-Ca -3'
miRNA:   3'- -CGGCGUGuaaUGAuUCGACAUcUGuG- -5'
29347 3' -47.7 NC_006150.1 + 92510 0.66 0.999866
Target:  5'- cGCCGUgcccgcugagcacgGCGUUcucggucGCUGAGCUGcgAGAgCGCg -3'
miRNA:   3'- -CGGCG--------------UGUAA-------UGAUUCGACa-UCU-GUG- -5'
29347 3' -47.7 NC_006150.1 + 129052 0.67 0.999859
Target:  5'- aCCGCACAUaACgacguggagacuGCUGUGGAaGCg -3'
miRNA:   3'- cGGCGUGUAaUGauu---------CGACAUCUgUG- -5'
29347 3' -47.7 NC_006150.1 + 131762 0.67 0.999844
Target:  5'- cGuuGCACAcgggauaagGCUcacugAGGCUGUAGuCGCa -3'
miRNA:   3'- -CggCGUGUaa-------UGA-----UUCGACAUCuGUG- -5'
29347 3' -47.7 NC_006150.1 + 119616 0.67 0.999744
Target:  5'- aGCCGCGCGacACUGaaagacGGUUGgcGACGa -3'
miRNA:   3'- -CGGCGUGUaaUGAU------UCGACauCUGUg -5'
29347 3' -47.7 NC_006150.1 + 70975 0.67 0.999744
Target:  5'- aGCCGCuuGcgGCUGuuGCUGUGGugGu -3'
miRNA:   3'- -CGGCGugUaaUGAUu-CGACAUCugUg -5'
29347 3' -47.7 NC_006150.1 + 95774 0.67 0.999675
Target:  5'- cCUGCAUGUUcacaucuucGCUGGGCcGUAGGCAg -3'
miRNA:   3'- cGGCGUGUAA---------UGAUUCGaCAUCUGUg -5'
29347 3' -47.7 NC_006150.1 + 139974 0.68 0.999489
Target:  5'- gGCCGCGCGUUGCgcaaucucggcAGGCU-UGGACu- -3'
miRNA:   3'- -CGGCGUGUAAUGa----------UUCGAcAUCUGug -5'
29347 3' -47.7 NC_006150.1 + 35961 0.68 0.999489
Target:  5'- uGCUGCACAcgcaGCUGcucagcAGCUGUcaGGugACg -3'
miRNA:   3'- -CGGCGUGUaa--UGAU------UCGACA--UCugUG- -5'
29347 3' -47.7 NC_006150.1 + 129842 0.68 0.999489
Target:  5'- cCCGguguauCACGUUGggAAGCUGuUGGACGCg -3'
miRNA:   3'- cGGC------GUGUAAUgaUUCGAC-AUCUGUG- -5'
29347 3' -47.7 NC_006150.1 + 50870 0.68 0.999365
Target:  5'- -aCGCACuguUUAUUucuuGCuUGUAGACACg -3'
miRNA:   3'- cgGCGUGu--AAUGAuu--CG-ACAUCUGUG- -5'
29347 3' -47.7 NC_006150.1 + 33267 0.69 0.997537
Target:  5'- cGCUGCugAUggcacugauUACUGGuucGCUGgcGACGCa -3'
miRNA:   3'- -CGGCGugUA---------AUGAUU---CGACauCUGUG- -5'
29347 3' -47.7 NC_006150.1 + 52414 0.7 0.995237
Target:  5'- uGCCGCACAcUGCUGacgauGGCacUGGACAa -3'
miRNA:   3'- -CGGCGUGUaAUGAU-----UCGacAUCUGUg -5'
29347 3' -47.7 NC_006150.1 + 154097 0.7 0.994448
Target:  5'- uCUGCAg--UACUAgguaguuguAGCUGUAGGCACu -3'
miRNA:   3'- cGGCGUguaAUGAU---------UCGACAUCUGUG- -5'
29347 3' -47.7 NC_006150.1 + 113013 0.71 0.992555
Target:  5'- -aCGCGCAUggggGCUAGGUccUGUAGGCu- -3'
miRNA:   3'- cgGCGUGUAa---UGAUUCG--ACAUCUGug -5'
29347 3' -47.7 NC_006150.1 + 72030 0.71 0.992449
Target:  5'- uGCCGCGCGUguaugaACUGAuGUUGcccucacUGGACGCg -3'
miRNA:   3'- -CGGCGUGUAa-----UGAUU-CGAC-------AUCUGUG- -5'
29347 3' -47.7 NC_006150.1 + 1626 0.73 0.971533
Target:  5'- uGCUGCGCAggGCgUGGGC-GUAGGCAg -3'
miRNA:   3'- -CGGCGUGUaaUG-AUUCGaCAUCUGUg -5'
29347 3' -47.7 NC_006150.1 + 195659 1.15 0.011191
Target:  5'- cGCCGCACAUUACUAAGCUGUAGACACa -3'
miRNA:   3'- -CGGCGUGUAAUGAUUCGACAUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.