miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29347 5' -44.4 NC_006150.1 + 103078 0.66 1
Target:  5'- -cAUCCCGCAccuGUCCCGAc---AUGCGu -3'
miRNA:   3'- cuUAGGGUGU---CAGGGUUauuaUAUGU- -5'
29347 5' -44.4 NC_006150.1 + 10010 0.67 1
Target:  5'- --cUCCCGaAGUgCCCGAaAAUAUGCGu -3'
miRNA:   3'- cuuAGGGUgUCA-GGGUUaUUAUAUGU- -5'
29347 5' -44.4 NC_006150.1 + 156294 0.66 1
Target:  5'- aGGAUCCCAagaAGUCCaCGggGGUAgcUGCGu -3'
miRNA:   3'- -CUUAGGGUg--UCAGG-GUuaUUAU--AUGU- -5'
29347 5' -44.4 NC_006150.1 + 17499 0.67 0.999999
Target:  5'- gGAGU-CCAUGGUCCUAu--AUGUACAc -3'
miRNA:   3'- -CUUAgGGUGUCAGGGUuauUAUAUGU- -5'
29347 5' -44.4 NC_006150.1 + 219400 0.67 0.999999
Target:  5'- --uUCCCAgCGGUCCCGAggaag-ACGa -3'
miRNA:   3'- cuuAGGGU-GUCAGGGUUauuauaUGU- -5'
29347 5' -44.4 NC_006150.1 + 113673 0.68 0.999992
Target:  5'- ---cCCCGCGGUCCCGAa---AUGCc -3'
miRNA:   3'- cuuaGGGUGUCAGGGUUauuaUAUGu -5'
29347 5' -44.4 NC_006150.1 + 30260 0.68 0.999992
Target:  5'- --uUCCCugGGUCCCGucugGAUuuccUACAu -3'
miRNA:   3'- cuuAGGGugUCAGGGUua--UUAu---AUGU- -5'
29347 5' -44.4 NC_006150.1 + 62965 0.69 0.999984
Target:  5'- cGggUCuCCGCGGUCCCGuUGA---ACGg -3'
miRNA:   3'- -CuuAG-GGUGUCAGGGUuAUUauaUGU- -5'
29347 5' -44.4 NC_006150.1 + 201860 0.69 0.999978
Target:  5'- aGAGUCCguCACuGUCCCAGUc--AUACAc -3'
miRNA:   3'- -CUUAGG--GUGuCAGGGUUAuuaUAUGU- -5'
29347 5' -44.4 NC_006150.1 + 57459 0.69 0.99997
Target:  5'- -cGUCCCACAGaUCCaCAAaGAUGcGCAc -3'
miRNA:   3'- cuUAGGGUGUC-AGG-GUUaUUAUaUGU- -5'
29347 5' -44.4 NC_006150.1 + 76272 0.7 0.999903
Target:  5'- cAAUCaCCACAGUCCCcgaGAUAaACAc -3'
miRNA:   3'- cUUAG-GGUGUCAGGGuuaUUAUaUGU- -5'
29347 5' -44.4 NC_006150.1 + 158200 0.71 0.999727
Target:  5'- aAGUCCCcagguaguCAGgccCCCAAUGAUGUACu -3'
miRNA:   3'- cUUAGGGu-------GUCa--GGGUUAUUAUAUGu -5'
29347 5' -44.4 NC_006150.1 + 60361 0.74 0.996199
Target:  5'- uGAGUCCCAUGG-CCCAucGUAGUGUGu- -3'
miRNA:   3'- -CUUAGGGUGUCaGGGU--UAUUAUAUgu -5'
29347 5' -44.4 NC_006150.1 + 195696 1.11 0.043811
Target:  5'- uGAAUCCCACAGUCCCAAUAAUAUACAg -3'
miRNA:   3'- -CUUAGGGUGUCAGGGUUAUUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.