miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29348 3' -45.7 NC_006150.1 + 142919 0.67 0.999995
Target:  5'- --cGACCAucacGCCGUAcauCUG-CCGCGCg -3'
miRNA:   3'- cgaUUGGU----UGGUAUuu-GACuGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 132937 0.67 0.999992
Target:  5'- ---uGCCAcACCAUGuuccgaGACUGGCCuCGCg -3'
miRNA:   3'- cgauUGGU-UGGUAU------UUGACUGGuGUG- -5'
29348 3' -45.7 NC_006150.1 + 139925 0.67 0.999989
Target:  5'- --gGGCCAGagggugggucuCCGUGGACuuguggaUGGCCGCACg -3'
miRNA:   3'- cgaUUGGUU-----------GGUAUUUG-------ACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 35924 0.67 0.999989
Target:  5'- -gUGACaguCCGUAAAgccgagguccCUGGCCACACu -3'
miRNA:   3'- cgAUUGguuGGUAUUU----------GACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 142843 0.67 0.999989
Target:  5'- aGC--ACCAGCCGUGAcaguccucGCUGugC-CACc -3'
miRNA:   3'- -CGauUGGUUGGUAUU--------UGACugGuGUG- -5'
29348 3' -45.7 NC_006150.1 + 126775 0.67 0.999985
Target:  5'- cGCgaacgAGCCAcaaGCCGcu--CUGACUGCACg -3'
miRNA:   3'- -CGa----UUGGU---UGGUauuuGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 116550 0.67 0.999985
Target:  5'- cGCUGA-CAGCCGUGcgGACUGAC-ACGu -3'
miRNA:   3'- -CGAUUgGUUGGUAU--UUGACUGgUGUg -5'
29348 3' -45.7 NC_006150.1 + 58590 0.67 0.999985
Target:  5'- ---uGCCGGCCAUGAacACUGugCAgcUACu -3'
miRNA:   3'- cgauUGGUUGGUAUU--UGACugGU--GUG- -5'
29348 3' -45.7 NC_006150.1 + 209683 0.67 0.999985
Target:  5'- gGUUAACUAugCAcUGGACU--CCACACa -3'
miRNA:   3'- -CGAUUGGUugGU-AUUUGAcuGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 194542 0.68 0.99998
Target:  5'- cGCUG--UAGCCAaGAgauACUGGCUACACu -3'
miRNA:   3'- -CGAUugGUUGGUaUU---UGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 220299 0.68 0.99998
Target:  5'- gGCU-ACCuuuCUGUAAA-UGGCCACACg -3'
miRNA:   3'- -CGAuUGGuu-GGUAUUUgACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 98025 0.68 0.99998
Target:  5'- aGCgucAAUCAGCC-UGGGCUaACCAUACa -3'
miRNA:   3'- -CGa--UUGGUUGGuAUUUGAcUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 182540 0.68 0.999972
Target:  5'- -aUGugCAAUCucau-CUGGCCGCACg -3'
miRNA:   3'- cgAUugGUUGGuauuuGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 199556 0.68 0.999972
Target:  5'- -aUAGCCuAGCCAaauUAAGCUGGCaauCGCg -3'
miRNA:   3'- cgAUUGG-UUGGU---AUUUGACUGgu-GUG- -5'
29348 3' -45.7 NC_006150.1 + 125899 0.68 0.999972
Target:  5'- ---cGCCGGCUcgGucGACUGACaCACGCu -3'
miRNA:   3'- cgauUGGUUGGuaU--UUGACUG-GUGUG- -5'
29348 3' -45.7 NC_006150.1 + 211492 0.68 0.999972
Target:  5'- uGCUAAUC-ACCAUGGccuuaacaaaccACUGGCuCugGCg -3'
miRNA:   3'- -CGAUUGGuUGGUAUU------------UGACUG-GugUG- -5'
29348 3' -45.7 NC_006150.1 + 133097 0.68 0.999962
Target:  5'- --gAACuCAACCAgggucUUGACCACACc -3'
miRNA:   3'- cgaUUG-GUUGGUauuu-GACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 215843 0.68 0.999949
Target:  5'- aGCUGACgccccaCAGCCAUc----GACCGCACg -3'
miRNA:   3'- -CGAUUG------GUUGGUAuuugaCUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 60417 0.68 0.999949
Target:  5'- uGCUAACCAcauuAUCGguu-CUGAaCCACAUg -3'
miRNA:   3'- -CGAUUGGU----UGGUauuuGACU-GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 114796 0.68 0.999949
Target:  5'- uGCUGACCAaguGCCAaGaacucuuaaugcGACUGaACCGCGa -3'
miRNA:   3'- -CGAUUGGU---UGGUaU------------UUGAC-UGGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.