Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2935 | 3' | -56.5 | NC_001493.1 | + | 110590 | 0.66 | 0.898171 |
Target: 5'- -cCCGaGGUG-CUcGCCGCGAUGuGUGGc -3' miRNA: 3'- guGGCaCCACuGA-UGGCGCUGC-CACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63944 | 0.66 | 0.890279 |
Target: 5'- aCACCGcGGUGACcAccacaucggcgacgcCCGCGggagccaacgacaccGCGGUGAc -3' miRNA: 3'- -GUGGCaCCACUGaU---------------GGCGC---------------UGCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 89185 | 0.66 | 0.877836 |
Target: 5'- aCGCgCGUGGUGACU-CCGCGcCuGUu- -3' miRNA: 3'- -GUG-GCACCACUGAuGGCGCuGcCAcu -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 66137 | 0.66 | 0.876409 |
Target: 5'- aGCgG-GGUGACUcgaugggaacauCCGCGACGGUc- -3' miRNA: 3'- gUGgCaCCACUGAu-----------GGCGCUGCCAcu -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63584 | 0.66 | 0.866185 |
Target: 5'- uCGCCGUGGUGAUauUCGCGgugucguuggcucccGCGGg-- -3' miRNA: 3'- -GUGGCACCACUGauGGCGC---------------UGCCacu -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63913 | 0.66 | 0.866185 |
Target: 5'- uCGCCGUGGUGAUauUCGCGgugucguuggcucccGCGGg-- -3' miRNA: 3'- -GUGGCACCACUGauGGCGC---------------UGCCacu -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63626 | 0.66 | 0.863188 |
Target: 5'- uCGCCGgugUGGUGGucACCGCGgugccguucGCGGUGu -3' miRNA: 3'- -GUGGC---ACCACUgaUGGCGC---------UGCCACu -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 46202 | 0.66 | 0.862433 |
Target: 5'- -uUCGUGGUcACcACCGCGGCauccuugGGUGAg -3' miRNA: 3'- guGGCACCAcUGaUGGCGCUG-------CCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63830 | 0.66 | 0.860918 |
Target: 5'- uCGCCGUGGUGAUauucgcggugucguUGgcucCCGCGGgcgugccgUGGUGAu -3' miRNA: 3'- -GUGGCACCACUG--------------AU----GGCGCU--------GCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 59822 | 0.68 | 0.769367 |
Target: 5'- gCGCCGaUGGguucacgcaaGCUAUCGgGACGGUGGu -3' miRNA: 3'- -GUGGC-ACCac--------UGAUGGCgCUGCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 59233 | 0.68 | 0.769367 |
Target: 5'- gCAUCGUGGaGAUU-CgCGCGAcCGGUGAu -3' miRNA: 3'- -GUGGCACCaCUGAuG-GCGCU-GCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 111179 | 0.69 | 0.759941 |
Target: 5'- uCGCCG-GG-GugUGCCGUGugGGg-- -3' miRNA: 3'- -GUGGCaCCaCugAUGGCGCugCCacu -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63458 | 0.69 | 0.740763 |
Target: 5'- aCACCGUGGUGACcACCacaccgGCGAugcccaCGG-GAg -3' miRNA: 3'- -GUGGCACCACUGaUGG------CGCU------GCCaCU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63662 | 0.69 | 0.740763 |
Target: 5'- aCACCGUGGUGACcACCacaccgGCGAugcccaCGG-GAg -3' miRNA: 3'- -GUGGCACCACUGaUGG------CGCU------GCCaCU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63539 | 0.69 | 0.731029 |
Target: 5'- aCACCGUGGUGACcACCacaccgGCGaugcccGCGG-GAg -3' miRNA: 3'- -GUGGCACCACUGaUGG------CGC------UGCCaCU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63842 | 0.69 | 0.731029 |
Target: 5'- aCACCGUGGUGACcACCacaccgGCGaugcccGCGG-GAg -3' miRNA: 3'- -GUGGCACCACUGaUGG------CGC------UGCCaCU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 86986 | 0.7 | 0.681266 |
Target: 5'- cCGCCGUuauccgccacuGGUGGCgugacgACCGgaccCGACGGUGGc -3' miRNA: 3'- -GUGGCA-----------CCACUGa-----UGGC----GCUGCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 24609 | 0.7 | 0.661018 |
Target: 5'- uCGCCGaugaUGGUGAUgAUgGUGAUGGUGAu -3' miRNA: 3'- -GUGGC----ACCACUGaUGgCGCUGCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63324 | 0.7 | 0.648821 |
Target: 5'- aCACCGUGGUGACcAccacaccggcgaagcCCGCGGgagcgaacggcaccgUGGUGAc -3' miRNA: 3'- -GUGGCACCACUGaU---------------GGCGCU---------------GCCACU- -5' |
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2935 | 3' | -56.5 | NC_001493.1 | + | 63413 | 0.7 | 0.646785 |
Target: 5'- aCACCGUGGUGACcaccacaccggcgaUGCCcacgggaGCGACcgcaccguGGUGAc -3' miRNA: 3'- -GUGGCACCACUG--------------AUGG-------CGCUG--------CCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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